RNA id: XM_039801489.1


Basic Information

Item Value
RNA id XM_039801489.1
length 2133
RNA type mRNA
GC content 0.48
exon number 11
gene id zgc:193690
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9925177 ~ 9933192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGCGGTTGGTCCAGGTCAGGAGCAGCGGCACGTCGTCACTTCACTTTGACGCACATCATTCACGCTGACATCAaacttttgataaaaaaaaattgttgtttCTTTCGAAAGAAACGCACAATTAATGTTTGAAAATGTCCGAAGACTCGTGGGCGGTTGCTGTGGATGTCCAAGAAGCCACAAATCCATCCACACAGTTTGACTTTTCAAAGAAAGTTGAGCGACTGCGTGGTCCTCGTAACATAAGAGGAGACATAAATGGCAACATATTGCCAGAGAAGACTGAAAATGGAGGTTCGAAAAGAGAGGCAGAAAAAGTGGACCTGGCTGAACAGTCCCTGTTGAATAAGCTGATCCGCCGCTCTCTGGTGCGGAACAGAAACCAGGTGGAGGTCCTGCAGCGGGACCCCACCTCTCCTCTCTACTCCGTCAAGACATTTGAAGAGCTGAGGCTGAAACCTGAGCTACTGAAGGGCGTGTACAACATGGGTTTCAACAGACCATCCAGGATCCAGGAGAATGCCTTGCCCATGATGTTGGCACAGCCACCTCAGAATCTGATCGCCCAGTCCCAGTCTGGCACGGGTAAAACTGCTGCTTTTTCTCTTGCCATGCTCAGCCATGTAAACCCGGACAATAAGTGGACCCAGTGCCTTTGCATCGCGCCAACATATGAGCTCGCTCTGCAGATCGGCCAAGTAATCGAGCAAATGGGGGCATTGTGCCCTGATGTGAAACTGGCTTACGGCATTCGGGGCAACAGACTGGAGCGAGGCGTCAAGTTGCAGGAGCAGATTGTCATCGGAACACCAGGCACAGTCCTCGACTGGTGCACCAAGTACAAACTCATTGACCCCAAGAAGATTACTATGTTTGTGCTCGACGAGGCTGATGTGATGATCGCCACGCAAGGCCACCGGGACCAGAGCATTCGGATCCATAGACAGCTGACAAAGGACTGCCAGATGCTCCTTTTCTCTGCAACCTTTGAGGACTCTGTGTGGAGGTTTGCAGAGCAGGTGGTTCCCGATCCCAACATCATCAGGCTGAAGCGTGAGGAGGAGACACTGGACACAATCAAGCAGTTCTACGTGCTCTGTAGGGAGAAGGAGGACAAGTTCACAGCACTCTGTAATCTTTATGGGAGCCTTACCATTGCACAGGCCATGATCTTCTGCCATACTCGCAAGATGGCTGCTTGGCTGACTGCGAACCTGACCAACGAGGGTCACCAGGTGGCGTTACTGAGCGGGGAAATGACCGTGGAGCAGAGAGCTGCCGTCATCGATCGCTTCAGGAACGGCAAGGAGAAGGTCCTGGTGACCACAAACGTGTGCTCCAGGGGTATTGACGTGGAACAGGTGTCACTTGTGGTCAACTTTGACCTGCCTGTGGACATGGATGGGAACGCCGACAATGAGACCTACCTTCACCGGATTGGCCGCACAGGACGCTTTGGCAGAAGGGGATTTGCCGTCAACATGGTTGACAGCAAACACAGCATGGATGTCATCAACCAAATTGAGATGCATTTCAACCGGAGAATCACGAAACTTGACACGAGCAATCTGGAAGAAATGGAAAGCCTGATCAGCTGAATGCTTCGCTACGAGCACTACCAAAGCCTGACGCCGTTAGACGTGTTACCTCATATTTGACCTGAGTTCTTTCCAgggtttgtttgcattttattgtttaCAGAAGAAAGATGCATACTAATATTAACTATGCAGACTTATTTCACGGCCGTCATTTTTGCCAAAGTTCTTTAATTTGATGTGTCCGACTTTGATCACTGAAGTCACCTTAAGCCTTTAAGCTGTCTCCCAGAGCCTATAAAGCAATCACTAGCTGTTAAAACGGCATTTAAGAAGAGGAGTGGTGATAATGTTTGTTAGATAATCTGAGGTGAATTCTTACTGTAGGATGTGTCTCATCTATAGATCAAGGTTGAGTTCAGATAAAATATCCTTGAGTGACTTGAATCATTTTAAGGTTTAAATGCCTTTTTCAGTCGTAGGTGTAGTTGACGGTTTACTGATAACTTAATTTGATCAATGACTGTGAAGCCAGAGCTGTTgctcattttttttgtgtgcttaaaaaaataaatatattgttgcatattaaa

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64726 lncRNA downstream 6298 9916578 ~ 9918879 (-) True G48477
TU64729 lncRNA downstream 31351 9892968 ~ 9893826 (-) True G48479
TU64692 lncRNA downstream 139936 9783714 ~ 9785241 (-) False hipk1a
XR_005639087.1 lncRNA downstream 158988 9764068 ~ 9766189 (-) True LOC120558310
TU64671 lncRNA downstream 162728 9760890 ~ 9762449 (-) True G48436
XR_005639099.1 lncRNA upstream 81211 10014403 ~ 10018354 (-) False LOC120558372
XR_005639098.1 lncRNA upstream 81211 10014403 ~ 10017139 (-) True LOC120558372
TU64766 lncRNA upstream 81775 10014967 ~ 10016118 (-) False LOC120558372
TU64777 lncRNA upstream 89936 10023128 ~ 10023993 (-) True G48522
TU64856 lncRNA upstream 366352 10299544 ~ 10299879 (-) True G48569
XM_039800987.1 mRNA downstream 9042 9904308 ~ 9916135 (-) True ints11
XM_039799252.1 mRNA downstream 23519 9890555 ~ 9901658 (-) True LOC120558325
XM_039799744.1 mRNA downstream 43481 9787365 ~ 9881696 (-) False LOC120558654
XM_039801810.1 mRNA upstream 45061 9978253 ~ 9985133 (-) False mul1b
XM_039801809.1 mRNA upstream 45061 9978253 ~ 9985133 (-) True mul1b
XM_039800013.1 mRNA upstream 161721 10094913 ~ 10109100 (-) True LOC120558779
XM_039800015.1 mRNA upstream 198499 10131691 ~ 10136381 (-) True LOC120558781
XM_039799833.1 mRNA upstream 383627 10316819 ~ 10325211 (-) True si:ch73-206d17.1
TU64679 other downstream 201043 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 227070 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1737626 7771936 ~ 8187551 (-) True G47934
TU64778 other upstream 91802 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 709527 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 1955749 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2193694 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2193694 12126886 ~ 12128425 (-) True G49083

Expression Profile