RNA id: XM_039801527.1


Basic Information

Item Value
RNA id XM_039801527.1
length 5016
RNA type mRNA
GC content 0.44
exon number 11
gene id pou6f1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11487065 ~ 11498064 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACCATGGCACCTCGCAAGTCGAAGCAGACATTTTTCAATGCAAGATTTTTTCCTTGCATAAATTATGTTCATGACGTAGTGCAAAAAGCCAATTTTCTGGCAATTTTGTCCGACTTTACAGCTCAGATAGGATTTTGTGAGAGCCCCGATGGATTTTTTTACTATCTGAACTGTTGCAGAAAGGGCATCGTCATTAAATATTAAGAGAGAGGAGATCCTAACATTGCAACCCTCCTTATCAATGCAAATACCTCTTTTGTGTGCAGTCACAGCGCCTGTCTGGGAGCTGAGATGAATTTTTAATTAGGTGTGACTGAAACAAACTGTGACAAGGACCTTTATAAAAGCGGGGGATTACAGAAAATAAGCTGCATTTACGCGAATGTCAGGAAGACAGTGGCTGTGGTGGTGCAGTGAGCCATGAACTCCAAGGATCCCCCTGCCAAAGATGCCCCACTTACTGTCAATGAGCAGGTAACCCTCCTCTGTCTGTTAAAGCACGATCAGCGGCCTTCTCTTCCCGCTATAACCACTCTGAGCTTAGCCAAACCCTGAAAACCTATGTTGTCCTCACGttctctgctgctgtttgcTCCTGTCACCCTCCATGTGTCAACATACCATACCACAATGGAATGATTAACCTCCACAGAAGTCCATTGAAAACAGGACCCACTTTGGGGTTAGCAGTCTTCAAACTGCCATGCTTATTAATAACTTGTGTTTTTTCCTCTGTCTAGTAACATTCTGTGTGGACATAGTCAGCAAACACAAGAAACGCTGCAGAGGGGAGCTTTGAAGAAAGCATTGCTTGAGCTGCTTGTTGGCTAATGctcttgtcatttttttttttttgtgtgtgtactcaTGCCATGCGCTTTTCATTCGTGtctctttttgttgtttggtttgttttgggTCATTGTGTCCTAACATGTGCTCGGCTTCTCTGTTCTCCATAGCCATTCACTGTCTGACTGCAGAAGTCTTTTTTCAGCCATTTAAATCCCGCACTTTGAAATTCCCTGCCAAAGACAGCCAGGTCATTGTGATGTCTGGCCATGAGACGATTCGTGTGCTAGAGGTAGAAGTCGACGCGTCCCTGCCATCGTCAGTACCTGATGTGAAGAGTGAAGCCAAAGCTGAGGAGGGAGTGGCTCGGCCTGCAGAGCAACCTGAGGCTGGCAGCACGCAGGACGTGCCCCAGAGCACTGGGGTAGTAGTGCTGGGCGAGCAGCATGTGGTGTCTGTAGAGGCTCCTGCCCCTGCTGTCCAAACGCTGACTCCTGCTGTTCCCGTCAGTTTGTCCCTGTCGCAGCCACAGGCCGCCATGCCCATCACTGTACAAGGCTGTCCACAGGTGCTGACCCAGGAAAGTTTGGCCACTCTGATGACTGGTATGATGGCCCAGACAGGATCCCTGGGGCAGCCCTTGCTCATCCCCCTCAGTATGGCAGGCTCCATTGGTGGCCAGGGTGGTCTGGCTGTTCTCACCTTGCCTACCACCAATGTAGCCACTATCCCCGGGTTCACAGCAGCTAACACGGCCGGAAATCTCCTCAAGCTGCCCTTTGCTGGCCTCCAAGCTGCGACAGTCCTGAACTCTGTCCAGCCCCAACTGCAGACAAATGCCCAGACGATGTTCCAGCCGCAAGCAGCTTCCATACAGCAGGTGCAGGCCACGTCTCAGCCAACACAGGTGACCAATGCCCAGGTCACCGCTGCTCAGGTGGCGGCAGCACAGGCCACCTCGGCCGCCACTACTGTCTCTCAGTCCAACATATCCTTAGCGGCACTCCAGACCGCAGGACTCTCCATCAATCCTGCCATTATCAATGCTTCTTCTTTGGGAGCTCAGCCCCAGTTTCTCAGTTCTCTCACCTCAACTCCCATCATCACCAGTGCCATGTCCAACATGGCTGGCATCACCAGCCAGATCATCACAAATGCCCAGGGACAGGTCATAGGAACCCTCCCGCTGTTGTTTAACCCAGCCTCTCTGGCTGGAGGGGCAGCGACACACACCCTTCCCCTCCAGGGGCTCCAGGGGCTCCAGGGGCTCCAGGGCCTCCAGGGTCTTCAGGGGCTCCAGGGTCTCCAGGGTCTCCAGGTCCAGACTGTCACCCCACAGCTGCTTTTCAACGCCCAGGGCCAGATCATTGCCACACTAGGGAATGGGTCTGCAGTTGCAACCTCTGCTGCTGCAGTTCTGCCCAAACCTGCTGCTCCTCCAACACTTACCAAAGCTGTCACACAgACTTCGGTAACAACTGTCAGCCAGTCACCAATTGTCATCGCCCCGCAGCCGTCTGTGCTGAAGACTGCCACCACGCTCTCCTCCATAGCACCCATCACCTGTGGAGACATTGCAAAAGTGGGCCAGCTCGTCAGCAAACCCCAGCAGGTAGTCAGCAGCGAGGAAGGCATTAATCTGGAAGAGATTCGAGAGTTTGCCAAGAATTTCAAGATCCGCCGGCTGTCCTTGGGGCTTACTCAGACACAAGTAGGGCAGGCTCTGACTGCAACGGAGGGTCCGGCCTACAGCCAGTCTGCCATTTGCAGGTTTGAAAAGCTGGATATCACGCCCAAGAGTGCTCAGAAGCTAAAGCCGGTGCTGGAGAAGTGGCTGGCCGAGGCCGAGCACTGGAACCAGAAAGGCCAGCAGAATCTGATGGAGTTTGTCGGCGGTGAACCATCCAAAAAACGCAAGCGGCGTACTAGTTTCACACCGCAGGCAATAGAAGTTCTTAACTCCTACTTTGAGAAGAATGCATTGCCAACAGGCCAAGAGATTACAGAAATTGCAAGAGAGCTAAACTATGACCGAGAGGTCGTGCGAGTATGGTTCTGCAACCGGCGACAGACGCTGAAAAACACAAGCAAAATCAACGTCTTCCAGGTTCAGTAGCGACCTTGTTCTGGGAGGCTTCGCCGCTGAtcttttgtcgttttttttggaAGATGAACATTTAATACAGCAACACAGTTGTGAATTGTGTTATAAATACAAGCCAGACTCTATTAAAGAATATGAACTTtttcagaaaaggaaggaaattaCATAAAAGTGTGTaatttgataataataataatagtgttaTGAAAGAGTAGTAAAGATGAGTTGTGATTGTATTTTGAGGCGGTATATGTGTACACAACTCCTGTGTGGTGGGTACTAAGTCAAACTGCATGGTCTTTTTATCATATACAGTGATGATAATACACGTGtcatatttaaaacatttgaataaCTTTTATACAAGTGGTTTTATAGGCTATCCCTCTGAATCGTATCGAGTGACATTGTGCATTGAGTCACATTGATTTTAGTCACATAATTGTCACTTTGTCACAAACCCTGACATTACGCTGATATTTGAATAACATGTTTTTGCCACCATGGATGTTTTCAAAATGCTTGCTGCTCATGTATTTCATATTTACGTAGTATTTGTACTGCGTGAGCAGCTTTGCAAACAAATAACGATTCTGACAGGCATAAGATTTTGTAGACTAAAATAGATTATCACCTTATTTTCATCAGAATTAGTTGTCCAATTAATGCCAAACTTTGCTATCTATGGACTCCTGACTTTGCAGCAGTATTTTAGGACAATCATCATTCTGATATTTCTTCATAATTACAAAGATGAGCTTAAAATCCGTAGTAATTTCCTCTTGTGTGGCTTTGATATTTTTATTCAGCAGCGTGAAAGGTGTCACACTGGAGTGGCTGTCAATAGAGAGGATCATTTCTGatggatcaaaaaataatatcaaaatAAAGTTGTAGCCTCGGCTATTGCCTATGATGCCACAACTGTAAACtgattttagtatttttttttttcttcatttgtaaGTTACTGGTCATGCAAatatgcatactgtatgtgtgtgtgaattcaCCACAGTCTGTcctgttttgacattttctgtTTACTGTGCTTATAATACTCTGAGAGTATTTTGTGATTTCCTCTTGATTCACTGTTGTCACTCTTCCCCTGGCTTGACAATGTTTCTGCTTAATTTTTTGAATCTTAAGTTAGATAAAGTATTTAGGAGGAGCTTAATTGGCCAATTATGAAGTCAATTTGAAATAGTCTTACGTTGCCtagacacatactgtaacaacatattttttagCTAATCTTACTAAGCCTAATATCAATCAAAttactgaattaaaaaaaatgtaatcaactgTTCAGCCAAGGAAGGGGTTTTGTGGTTTAATGTGTTATGACTTTCAATCTGAATGAGTTTGAAGAGTGTTTGCATGTGCGGTCTGAAGCTATTTTCTAGGAACAatactatggtgtttttctttgtatttgcCAATTCTTCAAGAATTCTTCGCACTTTAGTGACAGCAGGGAAAGTACAGTAAAAGGGTTACGAATGGTTTATGTACAGTGCAAGGTTTCAGTTATGTATGTGGGAGAATTTAATGTCTGCATTTCAATGTTTATTGAACAGCAAGAATCTTTTGATTTGCAAAATGTAGCAGTACTGGCAAAATTGCAATCATCAACTTAACAAGCAACATCTATCTCTAAGATTAACTTACTTTTTATgcagatgaaatgtaaaatacTGCAGATTAAATATAAAACCTAATATGCATTAATCACATTCTTTGATTTTGTGAATTACATGGTGCATTTGATGGTCCAGCTCATATTTTCCTTTTGAATAATTTTgaataaataggcctatattgCAGTGGACATACGTACAGTATATGCCTAACCATACAAAATAATTGATATTGCAGAGGTTATGCTTTAATGTGGTTTCCTTCATGTTCAATATGGGATGACAATATTTAATATTGTTTAATAAAGTTATCAATAGAGAAAAGAAGAGCTAAACTTTAATAAGATAAGATATCAGCTTTAAGTCATTTGATTTTTGCAAAGCACATAAAATGtgagaaaagggaaaaagaagTTGAATGCTATCTGTCTTTCTGTCCGAAAAATCAAATAAACCCTGTTTTTACTAACGA

Function

GO: NA

KEGG:

id description
K09368 POU6F; POU domain transcription factor, class 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65282 lncRNA downstream 48364 11438272 ~ 11438701 (-) True G48891
TU65116 lncRNA downstream 265586 11220997 ~ 11221479 (-) True G48761
TU65111 lncRNA downstream 278448 11208394 ~ 11208617 (-) True G48756
TU65104 lncRNA downstream 337683 11149074 ~ 11149382 (-) True G48749
TU65059 lncRNA downstream 629056 10838207 ~ 10858009 (-) False LOC120558410
TU65275 lncRNA upstream 5763 11503827 ~ 11508308 (-) True LOC120558961
TU65296 lncRNA upstream 66007 11564071 ~ 11572989 (-) True G48903
TU65276 lncRNA upstream 78475 11576539 ~ 11578988 (-) True G48886
TU65301 lncRNA upstream 102228 11600292 ~ 11600508 (-) True G48907
TU65304 lncRNA upstream 107669 11605733 ~ 11606614 (-) True G48910
XM_039800857.1 mRNA downstream 9149 11464498 ~ 11477916 (-) True tfcp2
XM_039800856.1 mRNA downstream 22939 11455743 ~ 11464126 (-) True csrnp2
XM_039799536.1 mRNA downstream 65604 11382182 ~ 11421461 (-) True itga5
XM_039799552.1 mRNA downstream 126870 11348286 ~ 11360195 (-) False slc48a1a
XM_039800359.1 mRNA upstream 6304 11504368 ~ 11508337 (-) False LOC120558961
XM_039801861.1 mRNA upstream 12669 11510733 ~ 11518488 (-) True bin2a
XM_039801982.1 mRNA upstream 23257 11521321 ~ 11531078 (-) True racgap1
XM_039799512.1 mRNA upstream 82229 11580293 ~ 11585970 (-) True si:dkey-190g6.2
XM_039799393.1 mRNA upstream 198892 11696956 ~ 11699952 (-) False zgc:56699
TU65038 other downstream 832247 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1461240 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1762931 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1788958 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3380870 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 390877 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 628822 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 628822 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 651730 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 722673 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile