RNA id: XM_039801574.1


Basic Information

Item Value
RNA id XM_039801574.1
length 2886
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120559665
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14823706 ~ 14833931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGGCGCGACAATATAAAGTTCCGCAGTGATTCCCTCATTGACTGCTGCTCtgcctcactcactcactcactggctggctgactgactgactgactgaggaAGAAGAGCAGAAACACAGCCGGTTACAGAGAGGATTTACAAAACTTCGTTATTATCCCCACTCTTATTTCTTTGTGATAGTCTGCCCGTTTAATTCATCTGCACCATGAAGGAAAGAAGACTCACGCAGCCTTTTGTAGCGAGGTGTAAACTCGTGCTGGTCGGGGACGTCCAATGCGGTAAAACAGCGATGCTACAAGTCCTGGCCAAGGACTGTTATCCAGAGACTTATGTCCCCACTGTGTTTGAAAACTACACCGCCTGTCTGGAGCTTGAAGACCAGCGTGTTGAACTCAGCCTTTGGGACACATCAGGTTCTCCATACTACGACAACGTAAGACCACTCTGCTACAGCGACTCAGATGCAGTGCTCTTATGCTTTGACATCAGCCGACCAGACACAGTAGACAGTGTGCTGAAGAAGTGGAAAGCAGAGATCCAGGACTTCTGTCCCAGCACACGGATCCTACTAATAGGCTGCAAGACAGACCTGCGCACAGACGTATGCACGCGCATGGAGCTGTCCAATCAGAAACAGACTCCCATCTCCCATGAACAGGGTTCGTCCCTGGCCAAGCAGCTTGGAGCAGAGGCTTACCTGGAGTGCTCAGCCTTCACATCCGAGAAGAGCATCCACAGTGTTTTCcgtaccgcggctctggcctgcATGAACAAACTCCAGCCTGCCAATAAACCCAGTCCCGTCCGCCGCCTCTCCAAGAGACTCCTACATCTGCCCAGCAAGACAGAGCTGCTCTCCTCCACCTTCAGCAAGGAAAAGTCCAAGAGCTGCTCCATCATGTGAATACTGTGGGAGCATGCAGGGGGGAAAAGAAAGCAAGGACAAGTAGGTAATTCAGCAGGGGGCCTAAGGGTGTGCAGGGGAAAGAAAGGAATGATTTCTACAATGCATCTCTGTCCTTTGCAGCATCCTCCTCGTcagccactgaaaagaattACACTTGCTACACTCTCTATATTCAACTCTGACACTGGACTTTTGATCACCAGAGacagagtgaaaaaaataaattacagctGTACAAATAGAGCATAACAGGCATTTTAATACCTTCTTGATTCCTTATAAAGGTTGCTGTGAGAGCTTAAATAAGGTCAGTGACTCCCAAGTGGTTGTAAACACTGCATTTGACTGCATTACCCTGATGAAATTCATTTGAAATTTTGATAGCGCTGCCCTTTCCCATCCATCTCTTTATCCGAATGTCTCTTTAAGGTCACGATATGGGCTGAGGTGACGAGATGAAATGTAAAATCTGACAGTGACAGGAAGTGGTACCTACAGAAATGCGGCTCGGGGAATTTCAAACAGCAGTTCCTCGTATAAATTATTCCCCCATTGACCCCTCACATTTGGAGATAAAAGCTGACAGTGGGGGGAAAGGGGAGAAAAAGGAGCAATTTGGCAAAGCAGAGTGTTCATTTGCAAAGGCAGTCAGAGGATGAACTGAGCACACGTCTGAAGGAGCCAGTGTGACTCAGCACTCCCATGAGCTATAAAACAGTCTAGGTGGACTTGCTGTGACATAGCAAACACAAAATCCTAGGCCATGTAAAGACCGTCGGAGCATGTTTTTGTCAGATCCCCTTTTATTACCCATCACCACAGCAGTATTAATTGTTCAGTTATTTATCACAAGGCTTGATTTTAGAGATGTTACATTAATGATGCATCTTCTCACTGTCCACTGATACTTTAAGAGCTGCTTTAATGGATATCAGCTTTTGTTCCAACAAAAactaattttcttttctttttttaaagataaaacaTAAAAGATTTCTTTTCACACAAGCCAAACTGTTTTGTACCAAAGGGAGTCTTAGaaatctctgtttttttttgaagatgCACCTGCTGCCATTTCCAGCCTGGATAGTTGCATTAACACTAAATTTCCCTGAGATGATAGGTGGGAAGGTTGATTTGaatcacaaataaaaacaggctGGTCCTGTCTGAAGAAAgaattttctttcctttttctctaaaaaaaatattttcattttatttttcaacttcCCTGAAAAGTATTCTTGACATTTTCcatttataaaaaagaaaatttttgTCTGGATGTTTCTACTTGCTTGTGgctgtctttgttttgttttgtggctGTTGATGTTGTTCTTGTATTTACTTGAGTCTTCTAGCATTAGCTGCTGTTGACAGCTCAGCTAATGGAGGATTGAGGATTTGTAGGTCTGCACCGAGAAGCCCAGAGTTCTCTGGATGTACGGAACACTGGAATTTTACGTGTTGCCTAGCAACAATGTGAGCAGGGGCAGGCGTGAGCGGGGTTCCTgcctcacagagagagagagggagggatggctCTCCGAGAGGACGCCTCACCTTTTATTTGTAGCATTAGACAGAAGCCACTGCGAAGGGGGCGGCTGGACATTTCAGGGAGCGACGGACTGCTCATGATCTCCACATGACGTCTAAAACATGTCTCTGTAGCTCTGCTTCAGTCGTTATTTCAAACAAGCTCCATGTAGTTCTATATACAGCCGTCGTTGAACTATTTCTCTTTTGCTCGTTTTTTGACGGACAGACTTTCATTTGTTGTACATATCCTTTCTAATAAATCTGTTTATTAGAAATCCCTAAAAAGAATGTTACTGaagcaaaacaaaatgtttgtgtCAAGTTGCCTATTATTATGGCTTTAAATTATTGACTGAATTCTGTATTTGTTATTGTCATATGCTCCTTTCTTTAAATCTTTGTTCAAATAAATATGTCTGATGTTCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66562 lncRNA downstream 139721 14682710 ~ 14683985 (-) True G49807
TU66555 lncRNA downstream 149858 14673628 ~ 14673848 (-) True G49802
TU66554 lncRNA downstream 151705 14669453 ~ 14672001 (-) True G49801
TU66514 lncRNA downstream 279074 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 398091 14416391 ~ 14425615 (-) True LOC120558545
TU66616 lncRNA upstream 11407 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 28864 14862795 ~ 14865747 (-) True G49862
TU66654 lncRNA upstream 50215 14884146 ~ 14885386 (-) True G49876
TU66656 lncRNA upstream 54844 14888775 ~ 14889514 (-) True G49878
TU66660 lncRNA upstream 68158 14902089 ~ 14902859 (-) True G49882
XM_039800515.1 mRNA downstream 9499 14805105 ~ 14814207 (-) True ddx23
XM_039800087.1 mRNA downstream 73685 14707418 ~ 14750021 (-) False LOC120558823
XM_039800085.1 mRNA downstream 73685 14707418 ~ 14750021 (-) True LOC120558823
XM_039800785.1 mRNA downstream 125808 14685045 ~ 14697898 (-) False LOC120559225
XM_039801430.1 mRNA upstream 71120 14905051 ~ 14920772 (-) True LOC120559597
XM_039801140.1 mRNA upstream 92357 14926288 ~ 14991890 (-) False LOC120559456
XM_039801141.1 mRNA upstream 92357 14926288 ~ 14991890 (-) False LOC120559456
XM_039801142.1 mRNA upstream 92357 14926288 ~ 14991883 (-) False LOC120559456
XM_039801144.1 mRNA upstream 92357 14926288 ~ 14991883 (-) False LOC120559456
TU66513 other downstream 289101 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 678484 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1570234 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2384981 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2432035 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 11407 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 11407 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1447113 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2854184 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3005613 17839544 ~ 17886333 (-) False zbtb46

Expression Profile