RNA id: XM_039801585.1


Basic Information

Item Value
RNA id XM_039801585.1
length 3038
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC120559674
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18818842 ~ 18826772 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCAGCAACTAGCACAGAACACAAGACAGACCTGCCAGCCATCAAATATACAACATTCTGTGTAGAGTACTTTAAGAAATCAAAGCTGACATTATCTTAATTCAGAAACGTCTGAATTCTGGCTCTGGATAGCCTCAGGACACCACTGGTCTTCATCTGTATGCTGACAAAAATTCTACAGACATCCAGAAAAAGAGTCCATGGATGATCCAGTGCTGGACTCATCTGCTCAGGCAGAACATGGTTTACTTCTGCTCAGGCAGCTAGAGAGGATGAGGGCAGCTGAGGAGCTCACTGATGTGGTGCTTCTGGCAGAGGGGATCCCCTTTGCTTGCCACAAGGTGGTGCTGTCTGCTTTCAGCCCGTACTTCCAGGCCATGTTTACATGTGGGCTGAAGGAGACCCAGGGAGGAGAGGTACCTCTTAAAGACACACCTGCTGAGAGCCTGGAGCTGCTACTGGACTACATGTACACAGCTGAACTCCCACTTTGCAACGACAACATCCAGGGAGTGGCTGCTGCTGCCTTCCTGCTCCATGTAGATGGAGCCTTCAGGTTGTGTCAGAGTCACATGGAGGCCTGTATGGACCCTTCCAACTGTGTCGGTCTGTACCACTGGGCCAGAGACCTAGGGGCCGCAAGTCTGGCTGACTGTACCTTGAGATACCTCTGCCAACACTTTTCACAGGCTTGTGAGGAGGAAGAAGTGCTGGAGCTGGATGCCCAAAGACTTGGGGATCTGCTGGGTTCAGATGACCTCAACATATCGCAGGAGGAGGTTGTGCTGGAGCTGGTGCTGCGTTGGGTGGAGAGGCGAAGGGGGGACTCCCAAAGCGAAGCCCAGGCTGTGGAGTTACTCAGGCGTGTCCGGCTGGAACTTGTGGACCCTGGATTCCTCCGTAAAGCCAGGAGGAGAAACCCGGTGCTACTAAGGGATGCTGAGTGCTTTGGAATGATTGACGCTGCTCTCCAGACCTCAGGTCTCTGTGAGATGTCAGCTCCACCTCGGCCGGCCCTTCGTTACGGCATGGAGACCACCGACCTGCTGCTCTGCTTGGGTGGGGTGAATAAGGAGGGGGTGCCTGCCCGCCGTGGAGGACTTGCTGACCTTAGTTTTTGCTTTGCCCCCCATGGTAGAAGGACTTACTACATCCCCTCTCCACTGAGGGGCTGTGGAGGTATGGGGCAGATCACAGCTGGGGTAGTGACACGAGACAACAACATAGTGGTGGCCATAGAAGCAGAAGACCAACACAGGATGAAGAGGGTGGATATCTACAGGTACGATAATTCGGAAGAGAACAGCTGGGTGGAGCTGTGCTCCACAGTATACAGGGACATGTATGCTTTAGGGCTGTTAGGTGATGCCCTGTATATGATAGGAGGTCAGATGAAATTGCGTAATCACTACATTATCACAGACAGTGTGGAGAGATGGTCGCTGAAGAGAGGAGGCAGCTGGCTCAGCTTTGCCCCTCTGCCTCTCCCCTTAGCCTGCCACTGCACCGTCAGCCTGAAGGAGCATCTCTATGTGCTGGGGGGCTGGACGCCACAGCACCAGCCAGATGATGAGCCTGACAAGCTGAGTAACcgtgtgtttcagtttgacccCGGCAAGGACAGGTGGACTGAGCGTGCCAGGATGAAGTACTCCAGGTACCGCTGTGGCACAGCTGTCCTCAACGGAGAAATCTACATACTAGGTGGTATAGGTTGTGATGGAGAGGATCGTGGACAATCACGTCGCTGTCTGAGCTCTGTGGAGATCTATAACCCAGACACAGACACCTGGAGGGCGGGCCCGACCCTGCCCACTTCTTTACTCACGCTCCGAACCAACGCCTCCAATATAGGAGCAGTGGAGGGCAAGCTCTACCTGTGTGGATACTACAAGGGGGCCGGCCGTCATGAGATCATCACCAAGGAGATTTTGCAAATGGACCCTGCAGACAATGTGTGGACGGTGGTGGAAAGACGAGCAGCCGTGCACGACAGCTATGACGTCTGTCTGGTGGCTAACCTCAATCCTCGAGACCTCTTCACACCCTAATTCATCTCCTCctgaaaaaatgcaaaaatgctTGGGGACAGGATGTGTGGGAAATAAGCTTCTGTCCTCTGAACCTCCTACTAAAACCTGGCATGACTCCTGGACTTCACATGTATCAACAGCAAGGTCAAGATACATGTCAAATCTGGATAACTTCCCAAAAAAAGGCAATACTCTGTGTTCTTTTAAACTCAGGTGTAAAATATCTGCAaagctttttactttttaaatgtataatgtTTCTAAAGTGTAACCATCAAAAgatcctcatacctaaacatCAAAATTGGGTTAGTTTCTTGGTGAAAGACCCATGTGACCTTTACAAAAACTATTCATATGAACGTTTTCTAATCTTCCACAGCtatggttaaggtttggttTAGTTTAGGGAATTTAAACTACTGGAATAAGAGTAGAGAAAAATTGTGGTCGGTGTTGTCTGTTGGTAGGAGACAGGATGCAAACTGCAGCCTCTGATGGCATGCACTTCCTCCCCCTGCTCCTAACAGATAACAGTAATGTATCACATTACCACAAGAGgttgattgtcacaaaaaatatttggcattttaaaGTTATAGTTTTTCATATGGAGAAAATTTGCTTATTTCCCATTCTTAGAGAGTCAGATGAGAAGAATGTTATCAATCCCACGTGTAGAGAGTGgtgttgatcttctcatctaaccctTAGTAAGAACACGATTAAGCAGATTCCCTAAAATTTCAAACTATTTCTTTTATGTGAGCAAATGGCAGATCAGAATGTTCCAAATGAGCTTGCTTTGTCCTTTAAGTTATATAAAATAGCTAAGAAGGAATGCTGGATAGAGAGTATCTGGGTCATTAACCATTTAATAATGAATGAAACCCACATTCTAAAGCCAGCAAGTTCAGAAACACAACAAGAAACAAGAACTAAATTGTAGTAAACTGTACAGTACTTGTTTTGTATCTTTATAAAAGTGTGTTACTGATTGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68243 lncRNA downstream 60341 18758042 ~ 18758501 (-) True G51069
TU68241 lncRNA downstream 78499 18738483 ~ 18740343 (-) True G51068
TU68237 lncRNA downstream 105629 18712675 ~ 18713213 (-) True G51064
TU68142 lncRNA downstream 183607 18634465 ~ 18635235 (-) True G50991
TU68086 lncRNA downstream 313826 18504469 ~ 18505016 (-) True G50945
TU68268 lncRNA upstream 96091 18922863 ~ 18928835 (-) True G51088
TU68282 lncRNA upstream 122061 18948833 ~ 18950436 (-) False kcnd3
TU68313 lncRNA upstream 400549 19227321 ~ 19227905 (-) True G51122
TU68349 lncRNA upstream 500880 19327652 ~ 19415195 (-) True G51147
TU68459 lncRNA upstream 629880 19456652 ~ 19459405 (-) True G51228
XM_039801584.1 mRNA downstream 1012 18801947 ~ 18817830 (-) True LOC120559673
XM_039800724.1 mRNA downstream 31559 18775750 ~ 18787283 (-) True samhd1
XM_039799506.1 mRNA downstream 95633 18713626 ~ 18723209 (-) False LOC120558486
XM_039799505.1 mRNA downstream 95633 18713626 ~ 18723209 (-) True LOC120558486
XM_039799507.1 mRNA downstream 95635 18713626 ~ 18723207 (-) False LOC120558486
XM_039800560.1 mRNA upstream 29168 18855940 ~ 18873169 (-) True si:ch211-117c9.5
XM_039799702.1 mRNA upstream 47983 18874755 ~ 18886895 (-) True LOC120558627
XM_039800430.1 mRNA upstream 104203 18930975 ~ 18933494 (-) True parapinopsina
XM_039800735.1 mRNA upstream 119196 18945968 ~ 19077781 (-) False kcnd3
XM_039800736.1 mRNA upstream 119196 18945968 ~ 19077781 (-) False kcnd3
XR_005639183.1 other downstream 932509 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1129082 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2534986 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3965025 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 53593 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 873001 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 874558 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 879907 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1493995 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile