RNA id: XM_039801592.1


Basic Information

Item Value
RNA id XM_039801592.1
length 2525
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC120559678
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13616876 ~ 13633635 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTAGCAACTTGTGGCTAGCTCGCTACCAAGGAAGGCAGAGTGCTCCGAGATCTGTTCCTCAGACACCACCCCGAGACTGTCCGCCCGTACGTAATTCGGTCTTTGAAGTCCAGATGCATGAGTCTGGGTCAGAACCAACACACACCATTCCAGCAAGTCAGACAGAGAACGGGAATACTAGTGAGAATGAAAGTCGAGTGAGGAGCAGCCAGACTCCTCCTCTAGAGGCACCCAGGGTTCCAGTGTCATTATCTATGATGACCCCACCAGCAGAAGCCCCACAGCAGTTGCAACAGACACCGCAGCAGCAGGTCCTCAGTCCTCAGCAGCTCCAAGCGCTGCTCCAGCAGCAGAAAGCACTCATGTTACACCAGCAACAAATTCAAGAAGTCTTCAAGAATCAGCAAGAGCAGCTAAATATTCAGCTGCTGCAACAGAAGAATGCTGGGATTGTTAGTCAAGAGCTGACAGCCCAGCAGATTGCCATCCAGCAGCAGCTCCTCCAGGTGCAGCAGCAACATCTCCTCAACCTGCAGAGACAAGGCCTGCTGTCTGTCCTTCCTTCCAGCCCCATTGCACTCACAGTTTCAGGCTGTGAGAATGGTAGCATCCTGTCCGCTGGTGGAGACACCAGAGAGTCTTCAAGTCAACGATCTACCAGCAACGGTCATCACACTCTtctgaagaggaaagaaagTGGGTCACtggatgaaaacacacagaataGCCATGCACTGTATGGAAATGGCATGTGTAAATGGCCTGGCTGTGAGACTGTCTTTGGAGACTTTCAGGCATTTCTCAAacaTTTGAACAACGAGCATACACTGGATGACAAGAGCACAGCACAGTGTCGTGTGCAGATGCAAGTGGTTCAGCAGTTGGAACTGCAGTTGAAAAAGGACAAAGAGCGACTGCAAGCAATGATGGCTCATCTGAAGTCCTCTGAACCCAAACCCGCAGCGCAGCCTgtgaatCTGGTGTCTAATGTATCCTTCTCCCAGGCAACACTGCCCAAAGGCCCTCCTCCTATGAGTTTGTCTCAGAGTGCCACAGCACCATCCACACCCCTGACGCCGCTCTCTGAATCCCCCTCAGTCCTCACTCCCAATAGCATGTTCACTGGAACTCCTGTACGGAGGCGATATAGCCGCTCTGTGAGCCAAGATATAGTTGATAATAAGGAGTTCTACTTGAGCACTGAAGTTAGACCTCCATTTACATATGCATCTCTCATAAGACAGgcTATATTTGAATCACCTCGCAATCAGCTGACGTTAAATGAAATCTACAACTGGTTCACAAGAAACTTTGCATATTTCAGGCGCAATGCAGCTACCTGGAAGAATGCCGTCAGACATAATCTCAGCCTCCATAAATGCTTTGTACGTTTGGAAAATGTGAAGGGAGCTGTGTGGACAGTAGATGAGATTGAGTTCCACAGGAGAAGGCCCCAGAAGACTGCTGGTAATGGGTCTCTGCTGAAGAACTCCCAAAACCACCACAGCTCAGCTGGGTCTGCTCATCAGAGCGGCGGTTTCGATGGCAACAGCTCTCTCTACAACCCAGCCTCTATGGGCAGCATCCCATTTCACTCCCTGTCTCATGTTCTCCAAGAGCAGATGAATGGAGTCCTTGCAAATGGATCTGGATACCAAAGTGACAGCAGTGCAACGCAGTCGCCTCCACAAGCTTTCATTAAAGAGGAGCAGGAGGATGAGGAGATATGTGAAGCGTATCCCTATGAATCCCCAGAGAGCACAGACGAGCACGGCCCCAGCCCAGAGATGCACCTCGATGAAGACAACGGCAGCCCGGAGAGGCCCAATCTTCATTTTGATCGCGTACCTTCTCTCTGACTACGAAGTCCAAAATTTCCACTGCAAGGCAGCCTCACTCACAGCCTGTGTGACTTTGTATTCCAAAAGTTTCCAAAAACAACTGCTTCATCTACATAACCTAGCAGTGCAAGCACTCTTTTACGTGGGGAAATTTTGTATCagcatttgttattttttgttcttAATCTAGCTCTCAATTATCTCTGTAGAGTGAgatcacaaaaacacatctgtttatgatttttctcattttatatatgtgtacACATGAAGACCACGATGAGCAGAGAAGCCAAAGGAAAGGGAACATTAATAGTTAGCACTTCACAATGAAAAATGTCCCACCTCTGTATAGCCACTTTATGCCAAGTGGGGGGCCTCACTACCTGATTTTATTTTAGTAGTcataatatataaaacattttgtagaggtaaaaaaaaaaatgttgctttaaaaaatgtaaatgttcacTGCCAACATGATCTGATATATTTGTATCTAAGGTATAATCAATTGATCAAAAGAATACATAGCTTATTTATACTTGTTGGTCTTTTTCACCCCTTCCACAAACATTGCTAAATTTGCTCTAATTGAGCTTGTGAGAGTAGATAATATAGATTTACCATTATTGTAAACCAATGCATCTCTATGAATAATAAATCCCTCATGAAAAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66135 lncRNA downstream 183781 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 209433 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 238013 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 248503 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 259071 13355117 ~ 13357805 (-) True LOC120558463
TU66283 lncRNA upstream 21896 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 21896 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 113784 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 406100 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 485346 14118981 ~ 14125759 (-) True smim29
XM_039801321.1 mRNA downstream 830 13609317 ~ 13616046 (-) True mdfic2
XM_039801772.1 mRNA downstream 57199 13535401 ~ 13559677 (-) True LOC120559773
XM_039801774.1 mRNA downstream 64583 13535401 ~ 13552293 (-) False LOC120559773
XM_039801771.1 mRNA downstream 64585 13535401 ~ 13552291 (-) False LOC120559773
XM_039801773.1 mRNA downstream 64586 13535401 ~ 13552290 (-) False LOC120559773
XM_039800921.1 mRNA upstream 3428 13637063 ~ 13642433 (-) True LOC120559297
XM_039800922.1 mRNA upstream 3428 13637063 ~ 13642153 (-) False LOC120559297
XM_039799848.1 mRNA upstream 91453 13725088 ~ 13739877 (-) True LOC120558698
XM_039799849.1 mRNA upstream 91453 13725088 ~ 13739874 (-) False LOC120558698
XM_039799851.1 mRNA upstream 91453 13725088 ~ 13739874 (-) False LOC120558698
TU66001 other downstream 363404 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1178151 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1225205 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1393874 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1447667 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 506745 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 898489 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1211703 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1211703 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2647409 16281044 ~ 16283856 (-) True G50217

Expression Profile