RNA id: XM_039801596.1


Basic Information

Item Value
RNA id XM_039801596.1
length 2992
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120559681
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14195482 ~ 14203960 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGTTGTTGAGTTTGTTATGACAAGTAGAGGCCTCGGACTAAATTAGGAGCGAAGCCCTGTCTCTGTCCGGGCGAATCTGAGATGGAGAGCATGGAactggacctggacctggaccaggAGCTCATGCAGAAATTTAGCTGCATGGGTACAACAGACAAAGATATCCTAATATCGGAATTCCAGAGGCTCCTTGGGTTTCAGCTAAACCCCGCCGGATGCGCCTTCTTTCTGGACATGACCAACTGGAATTTACAAGCAGCCATCGGAGCCTACTATGACTTTGAGAGTCCCAACATCAGTGCACCGTGCATGTCCTTTGTGAGCGATGTGACGATTGGTGAGGGAGAATCAGTTCCACCAGACACTCCTTTCACAAAGACCTGGAGAGTACAGAACACAGGTGCAGAGTCATGGCCTCCTGGGGTTTGTCTGAAGTATGTCGGAGGAGATCAGTTTGGGCATGTAAACATGGTGATGGTGCGGTCTCTAGACCCTCAGGAAATGGCTGATGTTAGTGTGCAGATGCATAGCCCTGCGTCTCCTGGCATGTACCAGGGCCAGTGGAGAATGTGCACAGCCACCGGACTTTACTATGGAGATGTCATTTGGGTGATCCTGAGTGTGGAGGTTGGAGGCCTCCTTGGCGTCACACAGCAGCTTTCCTCTTTTCAAGCGGAGTTCAACACTCAGCCTCACCGCAGCCTGGAAGGAGATTACAACCCCTTCGCCTCGCCAGAAAAGAGCAAGTGCCCCAACAGCAACAATAACAGCCTCCACGATGCCAGCGGTCACAGGGTTGCAGAGGAACATTGGCAGGGAAGCCCTAACCAGCTGCAGCAAGAGCAGAATGGACTTTCACACAACTCTGTGGATATTGTAGCAAACAGTCTACAAAGCAATCTATCAGTAGTCGCTTATAACCAGGGTATACAGGAGCCCTATCCTTTTGGGCAATCTTAAATCATGGGACTTATCACATTGAAGCAGCACCAAACCTCTGGAGTCTGTCACACCAATAAGTAGCTGGTCGAGAGTGTGGAGATTCAAAAACACTTTATGCAAAGTCCAGCTACACTTTGAGAAACCAGAGGCCAACGCTCCCGACGTGCAGCTCAACCAACACCCCACAACCCACTGTATGCACGTGTGAATGCTAAGTTAAAAACGAGTGCTATGAGTCTTTTGAGTGATTTgagtctctcttttttctgatttttttttagttgtcAGAGTGCAAATGAAACAATGATGACAGGAGTGGGTATTTGTGaattgtgtgtacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcattgtgcaACCTGAAAGAGAGACTTTGGAGGAAAAGCCATTTATTTTGCCAACTGATTCTCCAGTTTCTGCTAAATATGGGCATATCTGAAACAAACTATTGGATATCATTGTTTACTTTTTATCTTCATTTTttaatatacactttttttttaagagaaggGGAACAGCCACATCCTTCAGAAATATATCTGAGGCTGATTCAACATGGCCTGTGCAGTACGGGCAATCGTTTACCTACTATTTTAAATGGGATACAAGTTTGTCCACTGGAGGGAGTCAGCCATTACATTACAAACAAGATAAGAGAAGATAAAATCAACACTGAGAAACAGAACTCTTATTTACAGTATAGCTCCTATGATTTAAGTCTTCATCattgtacagaaacatttttctCTTAAGCTAGACTCTGGAGCCAACTATTTTATTATACGTTCTGTAGTCAAACATGATGaagggttttttttcttcccccacACATTGCTGGTACTTTTGCATATAAACATCTATGAAATATTAAAAGAATATTAGCAGAATATTCATTATTAGTAATAATGCAGTATTACAGATTTCCTATTATCTAAAGCTaagatttagtttagttttacatGCTTGAATTAAaattaaacaacacaacaacatgatGAATGCACACTATGACATAATACATTGAATTCAAGCCATACGAACAGCAGTAAAAACATTATGACacattataaaaaagaaaacataattgTTCTTTGTCACCCATTTTAAAGCTGTCTTGAAGCTGTCTGTTTTATCATATTAAGTTGAATGTATTTGATGAATGTAGAAAAAGATAATGTTTTTGGAAATATATTAATTTACCCAAAGATTCAACGTTGTATATTTGCATCGAACTGGCAGTTTTATGAGTGTAGTTATTGTTCTgaatacaaaaaacaatgtctATTGTTAAAAATGATGCGTATGATGTTCCACATTAGAGTCTACAAAATGTTCTCACTAACCATCGATGAGCTTCTTAAACACATTTGAACATTTGTTTGATCATTGCAGATGCAAACTTACCTGCACCAGTGACATTACCATGAAGTGACAGACTGATGTTGTCTCGCAGAATTGTTACTGCACATTTACTTGCACTAACCAGCTGATCTATGCACTGAGTAATGCAACCTCCATCACAAGGCCCGTGTGTACCTTTCTCCTCCACAAGTACAGTTAAGTCCTGAAGGGTTTGTCAAGTCAATGTGATTTTATCTTATCATCCACAGACAGTGTATAAGACCCCCTTGTCAGGTGAACACCCTTCATTATTGAGGCACTAACTGTGAGCCCCAGGGTTATTGAGCTTTGACAGCATGACAATACCAGCCAATACTTCAACATGTCATGCGGATCTCTGTGCATTAGCTGTGCAAAAATGTTAATCATAAATGTTTCTCCCTGCCGTCAAAGGTATCCGCTGTCAACGCCAATTCATCAAGTGTATTTTGTTATTAGTGTAATATCTCTCTGAGGTTTCCACTGGCCAGATTGCAGAATGAATCAGTTGGCATTAAGACTCTTACAACAGCACATTTATGAGAGCGAGGAAGTGCAAACAGATGAAcgcttttttttcctgtgtgtttgaAGAATGTTTGTATGATTAAATTATCACTGAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66368 lncRNA downstream 11091 14180340 ~ 14184391 (-) True G49673
TU66319 lncRNA downstream 69723 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA downstream 69723 14118981 ~ 14125759 (-) True smim29
TU66299 lncRNA downstream 447023 13747419 ~ 13748459 (-) False zgc:66479
TU66284 lncRNA downstream 538106 13655531 ~ 13657376 (-) True G49624
TU66371 lncRNA upstream 1629 14205589 ~ 14205824 (-) True G49675
TU66372 lncRNA upstream 4612 14208572 ~ 14208852 (-) True G49676
TU66373 lncRNA upstream 8250 14212210 ~ 14212497 (-) True G49677
TU66374 lncRNA upstream 13060 14217020 ~ 14217510 (-) True G49678
TU66375 lncRNA upstream 13687 14217647 ~ 14218807 (-) True G49679
XM_039799869.1 mRNA downstream 2146 14185309 ~ 14193336 (-) True LOC120558709
XM_039799871.1 mRNA downstream 52988 14140380 ~ 14142494 (-) True LOC120558710
XM_039799863.1 mRNA downstream 69659 14122480 ~ 14125823 (-) False smim29
XM_039799861.1 mRNA downstream 69820 14121046 ~ 14125662 (-) False smim29
XM_039800933.1 mRNA upstream 24410 14228370 ~ 14230406 (-) True taf11
XM_039801022.1 mRNA upstream 200058 14404018 ~ 14409405 (-) True si:ch73-217n20.1
XM_039799588.1 mRNA upstream 212376 14416336 ~ 14432994 (-) False LOC120558545
XM_039799587.1 mRNA upstream 212376 14416336 ~ 14432994 (-) False LOC120558545
XM_039799586.1 mRNA upstream 212376 14416336 ~ 14432994 (-) False LOC120558545
XR_005639168.1 other downstream 50260 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 942010 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1756757 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1803811 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1972480 12220737 ~ 12223002 (-) False ppdpfa
TU66513 other upstream 328164 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 641378 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 641378 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2077084 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3484155 17688115 ~ 17689760 (-) True G50712

Expression Profile