RNA id: XM_039801614.1



Basic Information


Item Value
RNA id XM_039801614.1
length 1010
RNA type mRNA
GC content 0.42
exon number 7
gene id tac3a
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21620971 ~ 21623462 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGCACAACGTAATAGAATATCCTCCTACGCTCCAGTTGCTGATTGGCGTTACGCAGGTATCCAGCTATTATTTATTAGCCCAAAGCTTGGACGTCTCATTTATCCTGACCGGATCTCACTGCAGGATCTATCTGTTCCAACTTTACTCTGCACCAGTGCGCACGCAGCTGACTCTTTGAACAAACTATCTGCTCGACAGAAAACAGGCGGTGCTGAGAAAATGAGGAGAGGCTTGCTGCTGGTGACTCTGTTCCTTATCATGAAACTTCAATACAGTCAGTCCAGATGCGAGGAGCCCGGATCGCGCACATCAACTTCAGATCAGACCACAGGCTTGGACAACCTCAAGCGGAACATTCTGAAGAGGTATAGCGATTTGGATTATGACAGCTTTGTGGGACTGATGGGGAGAAGAAATGCTGATGCAAACGCTGTACAGGCACCACAAAAAAggGAAATGAATGACATTTTTGTTGGTCTTATGGGAAGGAGAAACTCAGAGCCTGATAATGGTCCCTGGAGGAGAGAGTATCCAGAGAGGAAAGGCATTTTTCTCAACAAGTGCAGGCTGAGGTTTCTTCAGGGGCTGTAGAAATTAGTTCTGAAGCAACTCTCTAACCTGGCAACAATGAAGAAGATCACAGAGAATACAACCAATGAACTGTCTGATGGAAACAACTAAATGGCGTGATTCACACTGTAGACCTGCCAGCTGGCTTATCAAAGTGACAATAAACTACATAGATTGCATTTGTTGTATCTGAAGACAAAACATGATTAGTAGTAACAGCCAATACATTCTATTCCTTTTATCATGTTATACCTTTTTCTTCAAAAgctcaaaataaaaatcattttgTATACATCATTTATTAATTCAAAATGTCAGTGCATTTTCCTGCAGCAGTTCTTAAGTGATTCTTCAAGCTTGTCTCCAGTGTAGAAAGTAATGTTCAATCACACCTGCTGCAATGTTTATTGTTGGGTTATATAAAATGACTGGACAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69263 lncRNA downstream 42720 21577361 ~ 21578251 (-) True G51864
TU69256 lncRNA downstream 54071 21566659 ~ 21566900 (-) True G51857
TU69247 lncRNA downstream 72233 21548513 ~ 21548738 (-) True G51848
XR_005639349.1 lncRNA downstream 88007 21532400 ~ 21532964 (-) True LOC120559690
XR_005639348.1 lncRNA downstream 104987 21513705 ~ 21515984 (-) False LOC120559689
TU69295 lncRNA upstream 93580 21717042 ~ 21719133 (-) True G51885
TU69298 lncRNA upstream 95730 21719192 ~ 21720123 (-) True G51886
TU69389 lncRNA upstream 155670 21779132 ~ 21781064 (-) True G51964
XR_005639357.1 lncRNA upstream 272866 21896328 ~ 21897591 (-) True LOC120559723
TU69412 lncRNA upstream 333999 21957461 ~ 21957711 (-) True G51978
XM_039801611.1 mRNA downstream 14674 21580204 ~ 21606297 (-) False b4galnt1a
XM_039801610.1 mRNA downstream 14674 21580204 ~ 21606297 (-) True b4galnt1a
XM_039799468.1 mRNA downstream 143863 21474380 ~ 21477108 (-) True sp5l
XM_039799244.1 mRNA downstream 217963 21396220 ~ 21403008 (-) True ankrd33aa
XM_039799243.1 mRNA downstream 217964 21396220 ~ 21403007 (-) False ankrd33aa
XM_039800435.1 mRNA upstream 16876 21640338 ~ 21640949 (-) True LOC120559010
XM_039801667.1 mRNA upstream 26941 21650403 ~ 21715402 (-) False znf385a
XM_039801670.1 mRNA upstream 26941 21650403 ~ 21708557 (-) True znf385a
XM_039801668.1 mRNA upstream 26941 21650403 ~ 21698259 (-) False znf385a
XM_039801672.1 mRNA upstream 26941 21650403 ~ 21685765 (-) False znf385a
XR_005639338.1 other downstream 421928 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 668453 20920699 ~ 20952518 (-) False LOC120558386
XR_005639107.1 other downstream 668453 20920699 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other downstream 668962 20883938 ~ 20952009 (-) False LOC120558386
XR_005639356.1 other upstream 350239 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 599687 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 906144 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1590636 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1590636 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile