RNA id: XM_039801624.1


Basic Information

Item Value
RNA id XM_039801624.1
length 2106
RNA type mRNA
GC content 0.49
exon number 13
gene id slc13a3
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11855050 ~ 11863694 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATAAAGTCCTGCTGCAACTTGCTGCTGCACTATGGTGACTCTTCTGTTTAACAGGCTTTCCAGAACAAACAGAAAATCTTGTCTATACACGAAAAGGTCTACCAGATGTCGTATTGAAGTCTGTCAGCCATTGTCACCACCCTACGAGGAGTTAAACTGTAGTGGCAAGTAGTTAATCTTCTCTGTACTCGGACAGAGTCTTCAAAGTACGTCCTATATCAGGCTCCCCTCAGGCACTCTAGAGCTCCCTTCCCTCTGAACAGAGCTAAAGTTCACTCCAGAGATGAAACTATCAGTTGTGTCCAACAAGCTGTGGTGCATCCACAAAGAGCTGATTCTCCTGCTCACTCCACTGGTGTTTCTGCCATTACTTTTTACTCTGCCAGAAAAGGAGGGAAAATGTCTTTATGTGGTGGTGCTGATGGCTATGTTTTGGTGCACAGAGGCCCTTCCTCTGGCCGTCACGGCAATGCTTCCGGTCTGCCTCTTCCCAACACTGGGAATTCTTCCATCCAAAACAGTCTGTCCTCAGTACTTCCTGGAAACCAATTTTCTCTTCCTCAGCGGTCTTGTGATGGCGTCGTCCATCGAGGAGTGGGGCCTGCATCGCAGAATCGCCCTAAAGGTCCTCACTATTGTCGGAGTAAAACCAGCCTGGCTTATACTGGGAATGATGCTGACCTCGTCCTTCCTGTCCATGTGGCTCAGCAACACCGCCACCACAGCCATGATGCTCCCTATTGCTAATGCCATCCTAGAGAGTCTGTTTGGAGACCTGGAGACCCTGAAAAGGAAGAGCAAGTCCACAGAGGATCCTGAGAATGACCTAATAAATGGTCAGTCTACTGTAAAGCTGCAGTCCCTGCCCTCAATGCCTTCAGAAAAATTAATGCTGTCAATAGATGGGACAGATGAGACGGAGCAGAGTGACATGAGGACGGCTGAGGAGATCCAAAAGGAGTCGGCCTATCAGCTGAAGGTGTGGAAAGGATTCTTGATCTGTATTCCCTATGCAGCCAGTATCGGAGGGACCGCAACGCTGACAGGCACCGCGCCCAACCTCATCCTGATTGGACAGCTGAAAAGCTACTTTCCAGACTGCGACCTCATCAATTTTGGCTCTTGGTTTGCATTCGCTTTCCCGCTCATGCTTCTCTTCCTGTTTTTGGGATGGATTTGGATCGCGTTTCTCCACGGGGGATTGAATACACGATTGTGCTTCACGCAACACGACCGGAGAGCCAAGGCAGAGGTCAGAGCCAAGGCTCTAATAGACGAAGATTACAGAAATCTGGGGCCCATAAATTTTGCAGAGGGAGCGATCGCtttcttttttgtattgtttgctGTTCTGCTGTTCACAAGAGATCCCAAATTCGTCACTGGCTGgtctgtgttttttaaaaaaggGTACGTCTCAGACGCAGTCACTGGTGTGATCATTGTGTCCATATTGTTCTTCTTCCCCTCGCAGAAACCTTCTCTGAGCTGGTGGTTCGACCCTCACGCGTCAAATACTCCTTATGTCCCACTCTTATCATGGAAGAAAGCTCAGGACTCTGTTCCCTGGAATATCATCCTGTTGCTCGGAGGCGGCTTCGCTATGGCTAAAGCTTGTGAgGAGTCTGGACTGGCCTCCTGGATCGGAGGCCACCTCCAGCCTTTGGCCGAGGTCCCTCCTGCTGCAGCTGTGATGTTGATCACTGCTTTCCTGGCCCTTTTCACTGAGTTCGCCAGCAACACTGCCACAATTATCATATTTCTACCCGTCATTGCTGAACTGGCTATTCGTGTCTCAGTGAACCCTCTGTACTTCATGATACCTGCAACAGTAGGATGTTCATATGCCTTCATGCTGCCAGTGTCCACACCACCCAACTCCATCGCATTTGCAACGGGACATCTCATGGTCAAAGACATGGTGAAAACTGGCATTGTGATGAACATCCTGGGTATCCTCTCAGTCTCTCTGGCTATGAATACGTGGGGCGTTGCCATGTTTGACTTGAACGTGTATCCAGAATGGGCTCACCCCATCAACACGTCCGCTGTTGTTACTGATGTGCGCCTATCACCTGTCCAGTCACTCAATGCTACACTCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65307 lncRNA downstream 239341 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 248436 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 254542 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 276062 11576539 ~ 11578988 (-) True G48886
TU65296 lncRNA downstream 282061 11564071 ~ 11572989 (-) True G48903
TU65449 lncRNA upstream 22271 11885965 ~ 11891046 (-) True srxn1
TU65457 lncRNA upstream 95685 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 139573 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 255964 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 256058 12119752 ~ 12121550 (-) False G49084
XM_039801842.1 mRNA downstream 6963 11844711 ~ 11848087 (-) True LOC120559814
XM_039799420.1 mRNA downstream 13477 11835663 ~ 11841573 (-) True LOC120558426
XM_039800928.1 mRNA downstream 29833 11818150 ~ 11825217 (-) True LOC120559301
XM_039800949.1 mRNA downstream 48606 11784803 ~ 11806444 (-) True spats2
XM_039801331.1 mRNA downstream 104491 11747712 ~ 11750559 (-) False ormdl2
XM_039799397.1 mRNA upstream 2013 11865707 ~ 11871461 (-) True LOC120558412
XM_039801194.1 mRNA upstream 14658 11878352 ~ 11880620 (-) True tcf15
XM_039801936.1 mRNA upstream 25123 11888817 ~ 11891139 (-) False srxn1
XM_039801638.1 mRNA upstream 35124 11898818 ~ 11907613 (-) True scrt2
XM_039800835.1 mRNA upstream 76566 11940260 ~ 11945510 (-) True slc52a3
TU65038 other downstream 1200232 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1829225 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2130916 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2156943 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3748855 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 25247 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 263192 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 263192 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 286100 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 357043 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile