RNA id: XM_039801633.1


Basic Information

Item Value
RNA id XM_039801633.1
length 3281
RNA type mRNA
GC content 0.54
exon number 6
gene id znf217
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9168882 ~ 9175214 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATCGTTGGAGAGAGCGCGCGTCAGAATTCAACAGCTGCACTGTGAGGACTCGCCAAGTAGAACAAATATGATTCACATCCAAACAATTGAATAGGTGAGCTGGCCCACCGGCAGCGAAACGCGTTTTGCGTGTGAAATGAAGAAGCAACTCACCCAGTCTGCTTCGCTCTCTACTGAACTCAGTCGCTCGTAGTATCGGTGTCATTAATAATCCGGAAATTCACAGTTGGTTCCTAATAATCTGGACAGGGTGTACAGCGTCGTTGTTCCACCTTCAGAGGACAATGCCGACTCACTCGCTGCCACCGTTTGTGGAGAGCCCGGATGGACTTGCCCAAGATATTCTTATTAGTAACAACGCAAGCATCCCAGGACCCGGCTCTAGCATGACACCACACGCCAGCTACTCAGAAAAGGCTGTGTTGCAATCCGAAGGAAGCGTACCGCTGTCTTGCATGTTCTGTGATCAGAATTTCACTCATCAGGACGAGCTAGGGCCCCACGTGTTAACGCAGCACCCCACCACTTTCTCTGAGCCAGCGGTGCTTAGGGTCGAAGCGGAATTCCGGATCCCAGGAGAGCGACCCCGGCCCAAACCCAGCAGCCTCCCTATCGAAAAAGAGGAGGTCACCAGCTGTATTGTGTGTGGGCAGGTGTCGCAGGATGCGTGTGAGCTGGAGACCCACATGAGGAAGCACAAGGACTACTTTACCTACTGCTGCAATGTCTGCGGACGGCGGTTTAGAGAGCCGTGGTTCCTAAAGAACCACATGAAGATGCATGTGAAACCGGGAGCAAAGAGCAAGGCCCAGCAAGACCTGGAGACCCCCGTCACAGTCAATGGTATTGTCCAAGACCCGGCTTCAGAACCTGTAGTCACGGTTTACAAAATGTGCATGGTTTGTGGGTTTTTCTTCCCCGACCATGACAGTTTGGCTGAACATAGTAAAGTACACAATCGAGAGGTGGAGCCCGGCAAAGATAAAGACGAGGAGAAAATTGAAGGCACTGCTGAATCTCTTGCCAAACAGGAAACGTTTCTTCACAGTCTAAACCTCACACCTCGCTCCTCGGGAGAAAGTTTGCAACGTGAGAGATCGTCAAAATGGATTCCCCAGCTGGATCCCTTCAACACGTATCAGGCGTGGCAACTTGCTACGAAGGGCAAGATAGCAGTTGGTCCTAATAATATAAAAGATATTGGCCAGGAAGCCAGCACAGACAATGAGGAATGTGGCTCCGATAAGGAGGAGCTGAATAATATTTGGTCTGAGGGCCAGGGAGACAAAGCTACAAAAGAGGTCCTTGGGAGAGAGCTCCGGTCCCAGCCGCAGACTGTAGCGGAGAACGCAGCGCCGCAGCGGCGGTCTCTGATGCAAAAGAACAAGGACAAAGAAAGGCCAACCACCTGCGAGGAATGTCAGAGAACCTTCAGGACCTACCACCAGTTAGTTCTCCACTCCAGGGTCCACAAGCGTGAGAGAGGCGGCGAAGAGAGTCCAACCAACTTTGTTGATGGGAAGTTGTCGAGTGCAGGCTCACTTGAGCACGCAGAGGAAGGCTGCGAGGAGGGCTTCGAGGAAGCAGCAATGGCAGAAAACCTGGGACCAGGTGAAGATGGTTTTGATCGCTCAAAAGTCCGCTCAAAAGGATGCAGTTACTGTGGCAAATCCTTCCGATCGAGCTATTACCTCACAGTTCATCTGAGGACTCACACAGGTGAAAAACCGTTCAAGTGTGCTTACTGCGACTACGCTGCGGCCCAGAAGACGTCGCTGAAATATCACCTGGAACGGCGCCACAAGGACAAACCTTACGTGGACATTCCCAGCAGACCCGTGCCTTTAGCGCCCTCTCCCAGCGATACAAAACGCGGAAATGACAATGAAAATCCCGCTCCGAATAGATCCAAACTCTGGGTCACTGTGGCCAGACCGCGCACCACCGGAACGCCAGAGGACCGATTTGATAGCCTAGGTAGCAAGCATGACAAACCACTCGTCCAGACGAATGCGGAGTATGAGAAGTTAATTGCTAACTCCGCCCCCTCCCCGACTGACGACGTGGTAGTAAAGTGCCCCGTGCCCATTAACCTGAAGATGGAAAGGGAGGCGATAAAAGACGAGAACTCTGAGGCCCCATTAAATCTGTCCTTAAAAgtgtctctctccatccctgcTACTGCAGAACCCAGAAACGCATTAATTCCGATTGGCTGTCCGTTTTGTGCATATAAAACCATGTACCCAGAGGTTCTGACGATACACAAAAAGCTCATTCATAAAGACAAGTCGGACAGCATGAAAAAGAATGGATTCGGCAGTTTAAAACAGAAACGTTTTACCGGTTGCCCCCCTGCGCTCGAAGGGAAAGATGTCCCCCCACTTCCAACGATTGACCGGCGCCACCCTCGTCGGACCAAGTCCCCACCCCCTCAACCCGCAAAGCCACAAGAGAAGACTCCGATTAACCCACCTAATGCGCCACAGCGCTCCCCTGTCCACACGCCCGTACACGACGTGGTCCAGGAGACCCAGCGTTGCACAATTAACGTCGACGCGCACCCCAGTCAGGAGTCGTCCAGGTACACGGAGCTCATGAGGAAGTCCAAGTATGCCACGGAGCGACCCGCCCCCCCCGACAGAGTGGGAATCGGGGAGAGGAGTTACCCAGTGAGAAGCGGCGTCATTTGGCACTCGGACGCGGCCAGGCTGTGCCTGTCGAGCAGGTTCGGGAGCCTCGGCCAGATGGATTTCGGTGAACCCTCCAGCAAGAGATTGAAGTACATGCTACCTCCAGCCAGGGAGGCGGACACCGGGGAGAAGCCTGGCTTTAGAGGACCAGCGGGGAATGTGTCCAGCAGGCTGCTTCTCTCAGGGAGAAGTGTGAAAGCCCCGTCGCAAATGTCGGGTCCGTCCGCAGGTTCTGAGACCTTGGGCTCTTTGAAGACTACGTCTGCAGCTATTGGAGGAGGCTTGGACACCGAGTGGAGCATGATGAACCTCCTGCGCTCCTACACACCCAATGACCTGGCGTCTCTCTATCACAGCACGGCAGCCAACCCCAGTCACGGAGGACTGGCCAACCCCAGAGCAGggGGCAGAACTGTGCTGTACCAACACCTACCCACTCTGCACAACCTTCAGAGGAGAGACCCCTCGGGCCCTTTCCCTAATCCTCAACGCTACGGGACCACTGACAAAAGCACCTAAAGTGGCATCAAGaTTTGAACTGTACGTCTCCCTTATTTTGGAGTAGTTCTTGGAAAGgtgtctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64434 lncRNA downstream 80139 9077075 ~ 9088743 (-) True G48255
XR_005639096.1 lncRNA downstream 422370 8743335 ~ 8746512 (-) True LOC120558360
TU64295 lncRNA downstream 460917 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 464171 8704391 ~ 8704711 (-) False LOC120559289
TU64267 lncRNA downstream 514563 8611698 ~ 8654319 (-) True G48128
TU64476 lncRNA upstream 36191 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 107563 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 110184 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 204267 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA upstream 204267 9379000 ~ 9385221 (-) False LOC120558858
XM_039800853.1 mRNA downstream 178571 8985972 ~ 8990311 (-) False zfp64
XM_039800852.1 mRNA downstream 178571 8985972 ~ 8990311 (-) True zfp64
XM_039800759.1 mRNA downstream 225075 8937739 ~ 8943807 (-) True sall4
XM_039800758.1 mRNA downstream 235593 8883251 ~ 8933289 (-) True LOC120559208
XM_039800985.1 mRNA downstream 295755 8849910 ~ 8873127 (-) False nfatc2a
XM_039800351.1 mRNA upstream 5954 9180687 ~ 9198974 (-) False bcas1
XM_039800346.1 mRNA upstream 5954 9180687 ~ 9198974 (-) False bcas1
XM_039800355.1 mRNA upstream 5954 9180687 ~ 9198974 (-) False bcas1
XM_039800352.1 mRNA upstream 5954 9180687 ~ 9198974 (-) False bcas1
XM_039800350.1 mRNA upstream 5954 9180687 ~ 9198974 (-) False bcas1
TU64005 other downstream 981331 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1062687 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1282032 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1670080 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1681822 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 515797 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 533598 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 850261 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1467986 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2714208 11888941 ~ 11891046 (-) False srxn1

Expression Profile