RNA id: XM_039801638.1


Basic Information

Item Value
RNA id XM_039801638.1
length 5335
RNA type mRNA
GC content 0.42
exon number 2
gene id scrt2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11898818 ~ 11907613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctctgtctgtgtgcgaATGCACAGACGGTTCAGTAGTAATTTGATGTGTGTCCCCGGGGACATTTGATGGATTAAAGCTAAGCAGCTCCATTTCGCAGCACCACCTGATCTTCCACTGCCTGTGCCCCATATAAAGGCTGGCGTGATTGCTGATCTCAGCTAGTCTGacagtctctctccctcctctctctgtctgtctccatctcttctcttcctcactggTCCCTTAAGCCTGCTGCATCACAGGAGCTATCCAGTGCTGAACAGGAtcgcttttattttttatttttttatttttctggggGAAGCTGGGGGAGCCAGAGAGTATCACACAGCATTGCCGTCAGCCTTGTTATCCACTGgtttccattttctttcttaTCTTATGTTTTTGGCCGTTGTCTTCACATTAAACGCAAGGATTACCGTCAAGCCAGCTCTGCTCGTGTGCTTCCTCAGAGggtctttcattttttttctcatgcgTTTTTCTCAGCTCTGTGTTTTTATCCATTGAAACATGCCCCGCTCATTTTTGGTGAAGAAGATCAAGCTTGATGATTTCTCTTCGGCCACTTccaatcatcatcaccacctgGACGACTCGTTCACTTTTGCACGCTCCATCACAGACTCGGTGACCAGCCTTGGGGTTCGTCTCAGCGAGAATGGCTACATCCAGGATTACATCACGCCATCTGTGTACCAGGGGGAGAAGAAAATGGAGCTGAAGCTGGCCTCGCCGGTGTCAGATCCCCTCTACACCCAGGTGAGCAGCGGAGAGGAGTACTGTGACCCCGACCTGAAGCACCCCGACAGCCCCCAGTCTGGCATGACAGCCAGCGGCTTCTACAGCGGTGAGTCGGAGGCCCTGGCCGAGGGTTACACCATGGATGCCTTCTTCATCTCTGACGGGCGCTCAAGGCGAAAGGGAGACACCGAGAGTCGCGGAGGGGGCTCGAGAAGCAGCAGTGCCAACGGTGGGGCTCAGGAGAAGGGAGCTGGCACGGCACGCCACTCCTGCAACGAGTGCGGCAAGACCTACGCCACCTCCTCCAACCTCAGCAGACACAAGCAGACGCACCGCAGCCTCGACAGCAAGATGGCCCGCAAGTGTCCCACGTGTAACAAAGTGTACGTGTCCATGCCAGCGTTGGCCATGCACATCCTCACCCACGACCTCAAGCACAAGTGCGACGTGTGCAGCAAGGCCTTCAGTCGGCCGTGGCTCCTTCAAGGCCACATGCGCTCACACACGGGGGAGAAGCCCTTTGCCTGCGCACACTGTGGCAAAGCCTTTGCTGACCGTTCAAACCTCCGCGcccacatgcaaacacactctGCCTTCAAGCACTACAGATGCAAGCGCTGCAATAAGACCTTCGCTCTCAAGTCCTACCTGAACAAGCACTATGAGTCAGCTTGCTTCAAGGGCTCTGCGGACGAAGACGACTCTGGATCAGAAAACTAACCACGAGGAAGAAGCTACATTTTGAACCCCTGTTGTAGGTTCACAACCAATAACCCTGTTCACTCTGCCCTCCATGccttttttcttccctttttttagAAAGCAATATTTTCACTGAGATTACGTGAAGAAACTCTAATGATTATGGCAAAGACAATTTCAAAAGATGCTGGATTTTTTTCCCTGCACAGTAGCTAATCGTCCACAGAAACATACAATCAAACAACCTTCCCCCAAATAGAGACTGTAGATGATAGTTGTACACAATTAAGCAACATGTGCTCGCACGGACGTGggcacatgtaaacacacatacactcacacggACATgtatgcaaatacacacacacacacacacacacacacaaagatgtaCGCACgtgtgcacatacacacagagacacactcacacacacacacacacacacacacacaattatataTGAGGCCTGGCATGTGAATTTTTATCAATGACTATAATGATATTGATATCAATAGTAATAATATTTAGATTCCTGATATTTTATAGCAAATAGcaatgagaaaatgaaaaaaaaaacataaaaaaggacTAACagtgttcttttgttttttagagACAAAATGACCTCTTGTATTTTTATGCTGCTTTTTATTTGCTAAGAATTGAATTCTTTTGCAACTGCCAACATGaactttttatgaaaatgtgaaCTATGACAGTATTTGCAAAAAAGGGagatcattttaaaaaggtaaaaagacAAACCCCTTTTTCCACACCAATGTTTCAATTCAACGGATGTTATTTTTCTATTTGATTTttctaaatttatttttttgtgcttaTTATCCCTTGTTGATCTAAAGCATCTTTGTAACTGTGGGTATTcaaaaagaaataatttaaataagcTATACACGATCATAGGCCATAGGTCATTCAATTCATATCTGCAAGagcagtgattttaaaacaGGCCTGTTGAACAGGTTATCACACATCCAATTCATAGTCTCACCCTGATGTACAGACTTGGACAAAAACACTGGGAGCCAGACCAAATGATCTATTGTTATAAGTGCCATGTGCAGTTGACTTGTCTATAGCAATGAAAACTCTCGTTGTTCTTCCTCCACCACGGTGGCTTGCATAAACTCTGCTGCCTTTATGGTGAATCGTCCAGTCTTAAAGAGCAATCTTCACCCAGTGTTTGAGGTGCTCCCCCTCGCCAGTGTTACCTCAGAGTGAAGGTATGGACTAACACACCCTCAGTTACAAAGTGACAGTCAAATtattctgtttgtctgttttatatGTCGCTCCAGGCTCCGCCCACGGTTTAGATGCATACCATCTATTTATCATgtaaatactttatttatctACCTATTTAcctatttattaatttattcaccttattttgtgtatttattgaaGACTTGCTTATTTGTTAATtaccatgtatttatttattgtttataatttaaaaaatgaacatccATTGACCTTGTAAGATGCTGCTGATCTTCAAAGAAAATGTTTATATGCATGAAAACTGTAGAGAGTCCATTGGACTTAGTTTtttaaagaggaacaatgtacAGTACCAGTGTTAGGAGACTTCAAACGAATGAATGCAGAATTGTTTCCGTGGCAATAACTTTACTGACACAGCAACTGACATGTATAACAATCACAGCTGTCCTGTTTTCAGTCGATTTAGGGCAATAAAAAGAAACgatgaaaacaaaaaactaaaatattctCCATCTTGCTGTTTTCCAATAGTCCAGCTGCCTCCTCGTGACTGGAGATGTTTGGCCCTTTTTGTCTTTAAATCTCAGGCAATAAATAAGTCCCAGAAATGGCCGACGGTGATGTGCATGTACACATCGCTATGAAAATGTAACACTATCGGTTATATAATAATGGTAGgtgtaattatatatatatatatacaccaacATTTCAAAGGTGCAAAAGCAATAATGATAGTGATGCAGTGACAATGAGCAACACTCAATCCTATATGCAGCGAGTCCAAAACTGCTACAGGTGTTCATTTGACTGGAAAAGGCTGCTATTCTAtaatagtattattattttaacttgTCTCTTGTTTTAATGAGAAACCAGgtaaaaacaaatctcttcCGGCAGCTGAAAGGCAGGTGTGATTTGACTGAAATGTTAGAAGGTTACACAACAATCATTCTAATAAATTTAGGTCACTGACATAAGAAAGCATTAAAATACAGTTAGGTAAACGGTCACTACTGCTGCCAAATTATTCtgtgcagttaaaaaaaagctaAGAAAATCTCTGAGGTGTCAAAAGAGAGAATGGATGGAGGTATATACACGTCCTAACCAGCACTGATGGAAATGATCTTGACGTGAACTGTCTTGGtagagagagtttttttttaaaaagattgTTGTAATAAAACGACGCGCTGTAATGCACTTCTAACTCCCCCATCATTTGTCCATGCCTCTTGTCGCTTCCCCTCCCCTACCAGCCATCCTCATCCCATCCCAACTGCCTCTAAACAGACGCACCGAGGATGAGATGTGTTGAAGAGGGATTGGCGGAGGGTGGCAGAGTGTGGGAGGATAACAGGTGTTTGCAGACAGACTGCAGATAGGGAGCGTAATTGAGTCGGTGAGAGACCTCCAAAGGGAAGGTCAAGCACCAGCAGGCAAATGCACTGTCAGCTATTTGCATATTCCAAATGGATGACACCATCGCAGCAATGCTGAGCTCgccctaaaaacaaaacaaaacacaaaactgaggagaaaagagaggaaagaggagttTCTGCTCCATTTGTCCGCCCTCTCGTCCCTGCTTCACCATCATCCTGTCAATGGTCGTCTAAGTGCTACAGCTGAATCACTGCATGAGAGCATCCAAACCACCTGGCTCCTGATTAACTTGCAGAACACACAGTTTGGCACCTCGCCGTATTATTGAACTAATGCAGAATTCACTACTTCctatagatttttattttttttatatgtttcaTGTTTTACTGTGGGACACAGCTATAATGCATCTCCAAAACCTGGGGACTGCTTTTTAATGAGGCAGATAAAAGCATTGAGATCATTAAAAACACCAATTGAAAATGTACTGTAGGCTTAGATCTAAAACTGGCAGCATTACAGATCGTCCTCAGAGAAGATATTAATTGAGAGAAAGGGAGGCACAATTGGATTCTAAACTTCTGAATTTAGATGTAGGgaaacattgttcctctttgatgatttttgtaaatatatttgtAAATATATCACAGCAATAATATGACAATGCATGTAGACATTTAATTGCTCTTTTTCTATtcatgttgtcttttttttttattaaaaagaagaCAAATACAGGTACCAATTGCAGTCTGGGTGGCCACGCGAATCAGGGAGTGTCTTGATTAAAAAGCTATCTGTTGTAAGTTACAGACAAAACAACTTCAAACTCTGTGTATTCTCAAAGATTTGATCATGTTCTGTATGATTTttctgttcttgttttcttttatttatgtgCCCGGCTTGGCTGCGCAatgaaaaagtgccaaaaagtATGATTTCCATGACAAAAGCCTTCAACATATGGTTGGCTGCTTGAAACCTTCCATATGGtcctcaaagaaaaaaaaaaaactgattaagattttccactttctctctctctctctctctctctctctctctctttctctctttctatctctctgttcCAGCTGAGTATGAAGAAACTTAAGCCATGATTGCTGAGGGGTGTTTTGATTTATCTTGTTCTGCTACAATTAATAATGATGACAACAATAGCAATGATAAcgttaataaaaacaatagcaCAAGGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65449 lncRNA downstream 7772 11885965 ~ 11891046 (-) True srxn1
TU65307 lncRNA downstream 283109 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 292204 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 298310 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 319830 11576539 ~ 11578988 (-) True G48886
TU65457 lncRNA upstream 51766 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 95654 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 212045 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 212139 12119752 ~ 12121550 (-) False G49084
TU65542 lncRNA upstream 233322 12140935 ~ 12141414 (-) True G49092
XM_039801936.1 mRNA downstream 7679 11888817 ~ 11891139 (-) False srxn1
XM_039801194.1 mRNA downstream 18198 11878352 ~ 11880620 (-) True tcf15
XM_039799397.1 mRNA downstream 27357 11865707 ~ 11871461 (-) True LOC120558412
XM_039801624.1 mRNA downstream 35124 11855050 ~ 11863694 (-) True slc13a3
XM_039801842.1 mRNA downstream 50731 11844711 ~ 11848087 (-) True LOC120559814
XM_039800835.1 mRNA upstream 32647 11940260 ~ 11945510 (-) True slc52a3
XM_039800849.1 mRNA upstream 45562 11953175 ~ 11957391 (-) False LOC120559253
XM_039800848.1 mRNA upstream 45562 11953175 ~ 11957391 (-) True LOC120559253
XM_039800850.1 mRNA upstream 45562 11953175 ~ 11956514 (-) False LOC120559253
XM_039800847.1 mRNA upstream 52141 11959754 ~ 11964029 (-) True peds1
TU65448 other downstream 7772 11888941 ~ 11891046 (-) False srxn1
TU65038 other downstream 1244000 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1872993 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2174684 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2200711 9690530 ~ 9698107 (-) False olfml3a
TU65528 other upstream 219273 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 219273 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 242181 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 313124 12220737 ~ 12223002 (-) False ppdpfa
TU65659 other upstream 481368 12388981 ~ 12391671 (-) True fkbp1aa

Expression Profile