RNA id: XM_039801661.1


Basic Information

Item Value
RNA id XM_039801661.1
length 5569
RNA type mRNA
GC content 0.48
exon number 28
gene id l1cama
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21828929 ~ 21878880 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGGTGTGTTTTTCTATCACTGCAGCATTAGCAGAGAGGAGAGTGGCACAATCAATTTCatagagaagaggaagaaaaggcACAAGTAGATAAGGAAAAGAGGGGAAAAACAGACGCAAGGAGTTGCCAGAGGAAAGGAACATCTCTGAGAAGAGGGCAAACCAGCAGGAGGGCGTGGACCTGACTTATAGAAGAGAGCgaaaggaaagagaagaaaaaaaagtaaaaagacgAGGAGCGTAAAAGGCAAAGTCGAGGCCTCCTGGAAAAGAAACAAAGTCTCGCACTTGCTCtgcacgagtgtgtgtgtgtgtgtgtgtgtgccctctgTGTGCGTTttactgtacgtgtgtgtgagCAGGTGGGACTTTGATGGGACAGTGAGCAATGCCTCACACGCAGCGACAGCAGGTTTGCAGTAGGGGGCAGTGGTCCTCTCGCCtactccccctcctcctcctcctctcccttgcTGCCCAGCCCAGTCAAGCAGCCATACACATACCCTCCAACTTGAAGAGGCCTCCGATGATCATCACACATCCGGAGTCTGTCACCGTCTTTAGTGTCGAAGACTTCGTCATGAGCTGTGAAGCCTCCGGCAATCCTCTACCCATTTTCCGATGGACAAAGGATGGAGAGGAGTTTGACCCAGGCAGTGACCCAGAGCTTAAGGTTTCTGAGCGCCCTGGCTCATTCGCATTCTACACACTCAGTAATTCTATGGACAACCTGAAGCAGTACCAAGCCAAATATGTCTGCTATGCATCCAATGAGCTGGGGACAGCCGTCTCTAACGAGGCCACACTCACCACTGATGTTCCCCCATCccagcagaaagaaaaaaaggtgaaTGTGAAGTCTGAAGAAGGAAACAGTATCATTCTGAAGTGTAACCCCCCACAGAGCTCTATGGAGCCTATCATTCACTGGATGGATTGGAGGCTACACCATATCCAGCTGAGTGAACGGGTGGTGGTGGGCAAGGACGGCAACCTATACTTTGCCCATCTGACAACTGAAGACAACAGGAATGACTACACCTGCAATGTCCAGTACCTGGCGACACGTACCATTCTGGCAAAGGAACCCATCACTCTGACTGTAAACCCCTCCAACTCCGTACTGCGGAACAGGAGGCCCCACATGATGAAACCTACTGGAAGCCACAGCACTTACCATGCTCTCAGGGGCCAGACTGTGGAGCTTGAGTGCATCGTCCAAggccttCCAACTCCCAAAGTTTCGTGGCTGAAGAAGGAAGGCGATATGTCTGAATCTCGCACCATTAAAGAAATGTTCAACCGCCGCCTGCGCATCAGTAATATCTCAGAGAGTGACGGGGGCGACTACCAGTGTATAGCTGAGAACTCCCAAGGGAAGGCCAGCCACACTTACACTGTGACTGCGGAAGCGGCTCCCTACTGGATCAAGGAGCCACCCAGTCAGTTATATGCCCCAGGTGAGACAGTCAGGCTAGACTGCATGGCAGACGGCATCCCCTCTCCTACCATCAGCTGGACGATCAACGGGATCCCCCTCTCAGCAACCGACAAGGACTCCAGACGTTCTCTGACACCAAGTGGATCTCTAATCCTAAAGGATGTCAACTTTGGAGACACTGCCATCTACCAGTGCCAGGCCTCCAACAAACATGGAACCATTCTCATCAACACCAATGTCTACGTCATTGAGCTGCCTCCCCAGATCCTTACTGAGGATGGGAATACATACACAGTTCCAGAGGGCAAGAAGGCTTTATTGGAGTGTGAAACCTTTGGCTCTCCTAAACCTAAAGTCATATGggagagcagcagcaccTCCTCCCTTCTGGCGGATCCCAGAATGAACCCGCTCACCAATGGAGTGCTTGAGATCTCTAATGTCACCCATGACGATTCGGGCTTCTACACCTGCTCTGTACAGAACACCAACTTGTCTGTCAGTGTCGAACTGGAAGTGCTCAACAGGACAGTGATCCTGTCACCTCCACAGAATGTGAAGGTGCAGCGTGGAAACACAACAATCTTCACTTGTCTGGCCCTTGTTGACCCTAAACTCGGCTCTCCACATATTCAGTGGAGAAAGAACGATAAAAAGATATTTGACTCCCACAGTAATGAAAAATACACAGTTGATGGACCAGAACTGAAAATAACTAATGTGGAAGCAGATGATGAGGCTGTGTACACCTGTCAGGTCATCACTAAGCTTGACATGGCTGAAGCCAGTGGCACTCTCACTATATGGGATAGTCCAGACCCTCCTGTCCTCCTCCAGATCACTGACCCTAAGCATCGTGCAGTCACCCTCAGCTGGACTCCTGGAGATGACCACAACAGCCCTGTGCTAGagtATGTGGTTGAGTTTGAGGACCAAGGTTCGAAGGAGAGAGGTTGGGAAGAGCTGAAGAGAGTAATGGGAAACAAGGAGCGTACTAGCCTAACTCTGTGGCCCTATATGTCCTACCGTTTCCGGGTCATTGCCATCAATTATGTGGGAAAAAGTGACCCTAGCAGGCCATCTGAAATCCACAACACACCTGCTGAAGCTCCAGACAATAACCCGGAAGATGTTAGAAGTGTATCCGAAGACCCAGACACTCTGGTCATCACCTGGGAGGAAATGGACGAACGTAACTCCAATGGACCTGACTTCAAGTATCGGGTGTTCTGGAGGCGAGTGGTGGGCAGTGGGCCCAACTGGCACACCAACTTTACAACCACATCACCATTCATAGTCAATGACATTGGCCACTTTTCTGCCTTCGATATCAAAGTTCAGGCTGTCAATGGGGAAGGGGATGGACCTGAGCCAGACATTGTCATTGGCTACTCAGGAGAAAATgTTCCATTGGAGGCTCCAATGATTGTCGGTATTGAAATAATTAACAGCACTACCATTGGAGTGAACTGGAGGGCAGTAGACAAAGAAACGGTCAGAGGACACCTGCTGGGATACAAGGTCTACTTGACCAGAATCGGCTCCAGGGGCCACCACCGAGGCCGGCGGTCCAGGGAGCCAGAGAGCACTGTGGTGGTGGAGACTGGGCCCAGCGAAGAGAAGAAAGTGATCAGTGATCTCAGACCATACTCCCACTACAACCTGGCCGTAACTGTATTCAACAGCAAGGGAGAGGGACCCCCCTCTGAGACACTGCCCTTCAGCACTGATGAGGGAGTTCCTGGTCCTCCCATGTCCCTGATGCTGGACAGCCCATCAGAGACAGAAATGACCCTCCACTGGACGCCTCCTGGCCAGCCCAATGGAGTCCTTATTGGATATCTACTGCAGTACCAACAGATTGTGGAGAGTGATGACAGCCCCATGCAGGTAGAGACGATAGACGACCCCACAGTCATCCACCTTACCCTGAAAGGCCTGGACCACCACAGCCAATATCGCTTCTTCCTGAGGGGGCGCACTGCTGAAGGGGACGGAGAGCCCATCATGAGGGAGGGTGCCACCACACTGGATGGAGTGCCTCCTGCCGACATCCACCTGTCTGTTGGGGAAAACTTTGTTAACCTCAGCTGGGTGGCCAAGAAGAGACACAGGAATGTTAGCTTCCAGGTCCACTACCTCAACAAAAATGATGGCAGTAAATGGAAGAAAACAGAGAAGGTGAACTCCTCTCAGTCTTTCTACCAGCTCCAGGGCCTGACTCCTGGCTCTCATTATCGTCTACTCTTCACCTACAGCAACACCACCTTCTTCAAGACTGAAATCAAGACAGAAGGAACAGGAGTGACGGAGGTGCAGCCAAGCTTTGCAACGCAGGGCTGGTTCATTGGTGTTGTGAGCGCCATCGTGTTGCTGCTACTGATACTGCTCATCCTCTGTTTCATCAAGAGGAGTAAAGGGGGGAAGTATTCAGTGAAAGATAAAGAAGAGGGTCCAATGGACTCAGAAGCACGGCCCATGAAGGATGAGACTTTTGGAGAGTACAGATCTCTAGAAAGTGACCTTGAGGAGAAGCGCACGGCCAGCCTGCCGTCCCTGGGCGAGGAGAGCAAGCTGTGCAGCGAGGACAACCTGGACTTCAACGGCAGCAGCGCCATAACCACTGAGCTCAACATGGATGAGTCTCTGGTCAGCCAGTTCAGTCGGCCCAGCGAGGGTCCAGAGGCGCTGCATGGCCTGCCAGACAACTCCCTGCTCAACCCCACCAATGGCATGCCCAACTCAGTCACCATCCTCGATTAACCCCCACACATCCACCTGGGGCCATCAGACCAAAACATGTCAACACATATGTGCCCATACGCTCCTGTTCCCTACTGACTTGCTGATCTGTAGTTTAACGACTAATACACaatcaatatattgactattcAGATGCCCCTGGCAGTCATCTGAACGACTAGACTGTTTTGACCAAAGGAGTGTCCAAAGTAGTGGACAATGTGATACAAGTTTGACTGACCTGAAGATGTCTTTTGACCCCCCTTCAACCTCCTTTTATCTGTGTAGTTTACAACATATCTTAATGACTAACATTcatttctctccctttcttctctttctttcgcTCTGCAGACAACTCTATAgaaagataaaaacagaatgTCGTACATGTAGAAATATCAAGAGGGATTGTAGGTATGGTCATAGAGATGCAGAGTAGTGCATTTAAAGAGGAGGATGATCATGGTAGAGCCTAGAGTGGGGAAACAGGCAGCACATGCTGCTGTTAAAAGTCTTAGATATTTATCATGCTTTATATTATTTCGCACATTTGTATGTCTAATGCCATTTGATGTCTCAGATTGTACTTTCCAGTGCCATTTTTAATACAAAACATCCTTTTTTGTTATCtgccatttttatttatattatcaatTTTTTCATATTGTTTTTTACACAATTTATATAAAACCCACGACTTCTCTTTATTGAAATATTTCACAGATCAAGACGTTTTCATTGAAACTAAGTGAAGCCAAGTTTCTTACTATAAATAGCATTGTATGCATATGGGGAACTTGCTGTGAACATGCTGAGTAGCATCTGGTGTATATAGCTGCATCTACATCTATCTATTTAGCCATAATACAGTATTATAGATATGTACATGCTCCTTATAAGTTCCTGTGCCTGCTGGGTCTGCATAGAGCACCAGATTGATGTCATTACTCTCTCGCCTTCCCACCAGAAGTGTAATGTCATTATTGGAAATGatattgtaattttttgtgTCGAAACCTATGTGTAGCTTTCTgtatctgtctttgtctctttatACACTGTATTAAAAACATTGTTGTCTCTAATTAACAATCTTTTCATACCTGTCCATCTCATACTTGGCAAACTGTTTGAGGAGCagtatttatgtatatttacaGATCAGAGAGTGGAGTCTTGTGGTTGAACACtctcatgttttattttcagactCTCATTAATGCAAGTTGATATTGCAGACAGACGTAATGATTGCCAGTTGATGTATAATAAAGGCAAGCAGTTGGTATTTACATCAAACACAGAGAATGTATTCTTTTCAGAGCTGGGCAGACATTGTATTTACATGCTActgattaaaaagaaaaatctgagCTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69389 lncRNA downstream 47865 21779132 ~ 21781064 (-) True G51964
TU69298 lncRNA downstream 108806 21719192 ~ 21720123 (-) True G51886
TU69295 lncRNA downstream 109796 21717042 ~ 21719133 (-) True G51885
TU69270 lncRNA downstream 203050 21619719 ~ 21625879 (-) True G51871
TU69263 lncRNA downstream 250678 21577361 ~ 21578251 (-) True G51864
XR_005639357.1 lncRNA upstream 17448 21896328 ~ 21897591 (-) True LOC120559723
TU69412 lncRNA upstream 78581 21957461 ~ 21957711 (-) True G51978
TU69455 lncRNA upstream 167888 22046768 ~ 22047729 (-) True G52009
TU69456 lncRNA upstream 174834 22053714 ~ 22055099 (-) True G52010
TU69459 lncRNA upstream 181832 22060712 ~ 22060924 (-) True G52013
XM_039801663.1 mRNA downstream 5510 21808296 ~ 21823419 (-) True smc1a
XM_039801678.1 mRNA downstream 69488 21749085 ~ 21759441 (-) False c1ql4a
XM_039801677.1 mRNA downstream 69488 21749085 ~ 21759441 (-) True c1ql4a
XM_039801676.1 mRNA downstream 99951 21726090 ~ 21728978 (-) True neurod4
XM_039801673.1 mRNA downstream 151287 21650403 ~ 21677642 (-) False znf385a
XM_039801648.1 mRNA upstream 19277 21898157 ~ 21957314 (-) False huwe1
XM_039801644.1 mRNA upstream 19277 21898157 ~ 21957314 (-) False huwe1
XM_039801642.1 mRNA upstream 19277 21898157 ~ 21957314 (-) False huwe1
XM_039801645.1 mRNA upstream 19277 21898157 ~ 21957314 (-) False huwe1
XM_039801643.1 mRNA upstream 19277 21898157 ~ 21957314 (-) False huwe1
XR_005639338.1 other downstream 629886 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 876411 20920699 ~ 20952518 (-) False LOC120558386
XR_005639107.1 other downstream 876411 20920699 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other downstream 876920 20883938 ~ 20952009 (-) False LOC120558386
XR_005639356.1 other upstream 94821 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 344269 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 650726 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1335218 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1335218 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile