RNA id: XM_039801664.1


Basic Information

Item Value
RNA id XM_039801664.1
length 5194
RNA type mRNA
GC content 0.44
exon number 22
gene id phf8
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21957952 ~ 21969199 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcagacagagacagacaaccgTCTGACGTCCGTCTGTCTTTGAAATGGCGTTGATGTAGTTTAATACGccgttatttgtagttattgtGCTCGTTTTGGTCGCTTCAGATTTTAGTTTTCTGGTCCAGTGTAAACTTCTGGACCTGGCCTCTATATTTGGGCATTGCGGAgttgataaacaaaaatgtggtAAAGCAAATTGTTTATAATTTACGTTGCATAATAAGGCCGCAGCTACCCCCGATCTTGCGTAGGGATTACAACGGCTTTTGAATGCTTGGCCTCCCGCAGCTAAATTTTGGTTTCCAAGTGAATCCCGGTGGACATGTGTATCAGTAACAGGAATCTGGAAGTGAAGTGACAGACAACAGCAACATTACCCTTACTGCATAAAAGCATTTAGTTTGTGAGTTTGTGAGTTAGATTTTGACATCTTAACATTAATAACGAGTGAAAgctaattcacacacacacttaatatggCATCGGTTCCAGTGTACTGCTTGTGTCGCCTGCCATATGATGTGACACGCTTTATGATCGAGTGTGACATTTGTCAAGACTGGTTCCATGGAAGCTGTGTTGGAGTAGAGGAGGACAAAGCAGCTGAGATTGACCTGTATCACTGCCCCAACTGTCAGGTCACCCATGGACCATCTGTCATGCGCAAACGCCGTGGAGGCAATAAGCAGACAGATGGTGGTGCTGCTGGAGCAAGAGATCCAGGTCGGCCTGTTaagactggcagcccacagttTGTTAGGGAGCTACGGAGCCGCACCTTCCCAGGTGCGGATGAAGTCTTGCTAAAGCCGTCAGGGGCCCAGCTGACAGTCGAGTTTCTGGAAGAGCATTCATTCAGTGTTCCTGTCATGGTGCTGAGGCGGGATGGCCTCGGCATGACCCTTCCTCCGGCATCATTCGGCGTCAGCGATGTAGAGCACTATATTGGTTCAGACAAACAGATTGATGTGATTGATGTGTCTCGGCAATGTGACCTAAAGATGCGATTGGGAGACTTTGTTGAATACTACAACAGCCCCAACAGAGACAGAGTGCTCAATGTCATCAGCCTGGAGTTCTCTGAGACCAGGCTATCAAACTTGGTGGAGACTCCAAAGATTGTGAGGAAACTGTCATGGGTTGAAAACCTCTGGCCTGAAGAGTCTGTGTTTGAACGCCCTAATGTGCAGAAATACTGCTTAATGGGAGTGAAGGACAGCTACACAGACTTCCACATTGACTTTGGTGGCACTTCGGTATGGTACCATGTCCTGAGgggtgaaaaaatcttCTACCTAATATCCCCCACCGCAGCCAACTTGGCACTTTTTGAGCGGTGGAGTTCCTCATCTAACCAGAATGAGATGTTCTTTGGAGACCAAGTTGATATGTGTTACAAGTGCTCTGTCAAACAAGGAAACACCTTGTTCATACCAACAGGGTGGATTCATGCTGTGTTGACACCAGTGGACTGCCTAGCCTTTGGAGGAAACTTCTTGCATAGTCTAAACATTGACATGCAGCTGCGAGCATATGAAATAGAGAAGAGATTAAGCACAGCAGACTTGTTCAGTTTTCCCAACTTTGAGACTGTGTGCTGGTATGTTGGAAAGCACCTTCTTGATACCTTCAGAGGTTTGAGAGAAAACCGCAGACATCCTGCCACTTACCTGGTTCACGGAGCTAAGGCCTTAAACAATGCCTTCCGCAGCTGGACCCGTAAAGAGGCTTTAGCAGATCATGAAGTGGAGATTCCAGAAACCATCAACACTCAGACACTAGTGAAGGACTTGGCCAAGGAGATTCGTCTGGTTGAGGACATCTTCCAGCAAAACATTGGCCGCACTGGACCTCAGTTTCCTGGTTCGCCACTCTCTAAAGCTCCTCTGACCACCTCCCAGAATTCAGGACGCCCTCCTGGAAAAAAGAAAGGACCCAAGCCCAAAGAGTTGATAGGGGGTCTTGTGTCCCCAGGGACCAAGAAGAAAAGTCAGAAGGGGCTACTTAAGGCAGAAGCCGGAGAACTTGACCTCATTGAGATCCACACCAAACATACACTCAAAAAATTTCAACCTGGCAAGTCGAAAAACAAGAACAAGTTGGAGTTGCCTTTAGAGGAATTTGAAGGGAAGCTAAATAAAAGCAAACTGAAACTTGTGCTGACCAATGGAAAAATCCAAAGTAAGAAGGACAGCAGCAGTAATGGTGCAGGAAGGGCAGGAAAGTACAAACATCTTGCCATGGAGGGATCCAGTCTGTCTGACTTGGAGTCCGAGGATGAGCTGCAGATTGACGAGACCCCTCCTCCACGACGCAAGCCTGCAGGATCAAGCAAGAAAAAGAAACTAAGCGGTCTTCCTAGGAAGCTGCCCAGAGCCAAACCCTGCTCTGACCCCAATCGCATCAGGGAGCCAGGAGAAGTAGACTTTGACATTGAGGAGGATTACACCACAGATGAAGAGGCACTAGCCGCCCACGGGGTGAAGGGTGGAGCGGGGGGCATTCTGGACTTATTAAAGGCCAGCAAACAAGTGGCAGGCTTGGACTCTGCAACACTCAGTGAGGAAGCACCAGCCTCTCCCAGTACTCGTGATGCCATACAGGGAATGCTGTCAATGGCCAACCCCCCTTCCTcatcctcatcttcctcctcttcatctcccCTATCCATTTCTGGAGGCCTGGCAGAGGGATTAGGGGTGGTCAAGGAAAAGGGGGGCAAGGCTGTGTGGGTGACTGGAGGGGTCAAAAAGACAAGAAGTCCTGAGAAGAAACCTGTCATCCAACGGCCTGGGAAACGGCCAATTAAACGGCCAGCTCGTCACCTTAGTGACGAGGACAGTCCAGATGAGCAAGAGACTCTGGGAACCTGTTTTAAAGATTCTGACTATGtTTACCCGTCCTTGGAGTCTGATGAGGAGGACCATGCTAATAAGGCTAAGATGAAGCGGAAGAAAAACTGGGATGACACACCTTGGAGCCCGAAAGccaGGGTGATGCCCACCCTTCCCAAACAGGATCGACCAGCCAGGGAAGGGGCTAGAGTCGCATCTGTAGAAACTGGTCTTGCAGCAGCTGCTGCCAAGCTGGCACAACAAGAGCAGCAAAAGCCTGCCAAAAGGAAGTACACCAAAAAGCAGCGTCCTCCTGCTCCGGTAGCCCCTCCTCCCCCTGTTCAGACTGAGCCAGCCTCACCCTCGCCACCACCTGCTCCAGAGTCTGCAGCAGACTTGAGCCCAGATAGGAGGATGGATTACTACTCTGCTAGTCTGTTGGACCATGAATACACAGCGGGGCCAGGACCTTTTGGCCCTGGAGGCCCTCGAGGCAGCGGAGCCATGGCCCCTGGTGTATTCCTCACTTCACGCCGACCTTCACTTTCTCCGCAGAACAGCAGCTCTCACTCTGGTGCATCGCCTGCAGGTTTGGCCAGCCAAGGCACAACAGGAGTTGGTCAAGGGAAACGTCCAAAGAAAGGACTTGCAACTGCAAAACAGAGACTTggaaaaattctgaaaattcACCGTAACGGCAAACTTCTCTTGTAAGAGATGTTGGAAATGTGGCTGAAGACTTTTAAGTTagaatgaatgaagaaaaagATTTTTGTGGAAGTAGGTCTGAAGGAAATAGAGATAGTGATCTATATTTTGTACTCTAGATACATTTGTTTACTGTTTTCACCTGTTGTTGAACCTCACGATATCTTGTCCTACACCAATTACTCTGCCCAGCAAATTAACAGCCTGTTTTGGCACTCCATTTATCCATATCTGCATATCTCCATATGAAGTTATTTTAAGAGGCTCTTCTGTGACTTGAAACAAATGGTAAGTAACTCCTAATGATCACATACCATTTGACATTGGCAATAGGAAAttgttaaacacatttttaaaatgactgGCGGACATGATTTAAATAGCTAGATTAACTAGCGTAATAAATTGACCCCTTTTAATTAGGCTATTTTAGTGGCTCTTTATGAAAAGACAttctacatttttaaaagggaaGGAAAAACAACACGTTCTAGTCAGGTAAATGTAATGGCTTTatagcacacacatacacacacacgcacacacacagttgtagTCTTGTATTTAGTTGTCTCTTTACCTCATAAACACACTCTTGTGTATGTATGATGATTCCAGGATACCAATctttacacaaaataaacagttttacaaaaaaacTGTGTATGCACATGGTCAGCACCCAGAATGCCACATATAAATTATTCTTGAGGAATTTGGAACTTGTTTGTATAACTAATTTTCCTCCTGTTATGTCTAGGAACAGAGGACTAACAATTAAAATAAACCTGTGGGAAAAAACATGGGATAGGTGGAAACAAGTCAAGGATAAATCCAATAATTAGTTGTATAGTATATGTTTTATACTGTAGCTCTACACATGAAGTACACATTACCCAACTGGTGCCAAGAGTAACATCAGACTGATCATTGTTATTTAACAAGGCAGCACTTTGCCATCTCTTAGCCTGTTTTAACATGGTATGTTTTTACCACCTCATCTTTTTGGTcccttatttaattattttcaaCCACTTAATACCTGCACAAAATGTTTATccatattagattttttttttttacagtttgttgTAATTGTAAATATTTGTAATATTTGTAATTTATATAGGTACATTGGAAGAGcagaaaaagaaatgaagagACTAGTTTCCTGCAAGTTGCCATAATTTGTGCCACAACTTTTGGCAGCATTCTTGGGTCAGATCTAGACATGTGCTTTCTTTTCACAGAATGTACTAGTTATCAATGTTGGCAGAAGTGTAGATTTAACTGTGTTAAAGGTGCAGGACATGAATTgatatgtaaatatatgttGTAATTTAAGTTCTTTTTATAGGTCAAAAACTTTCTTAACATAACTTGTACAACATACATTGCTGTATTTGGAAAATATCTGAAATagttcatttttttatatttgtacgAAGTAATTGTCATGCTTAGTTTGTCATGTTGTCTTGTCAGTGTAATAGTGGAAATGTTCTTGAAAAAATGCCCTCATTTAATTTCATCATTTCgttttatattaattattgttGATATTCACTCTTTTttggtgtgtattgtgtgttttaaacatgttttaaaaactaCCTGAAACAGATAAAATATACCTTGGGCAAATCTTA

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19415 PHF8, JHDM1F; [histone H3]-dimethyl-L-lysine9 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69412 lncRNA downstream 241 21957461 ~ 21957711 (-) True G51978
XR_005639357.1 lncRNA downstream 60361 21896328 ~ 21897591 (-) True LOC120559723
TU69389 lncRNA downstream 176888 21779132 ~ 21781064 (-) True G51964
TU69298 lncRNA downstream 237829 21719192 ~ 21720123 (-) True G51886
TU69295 lncRNA downstream 238819 21717042 ~ 21719133 (-) True G51885
TU69455 lncRNA upstream 77569 22046768 ~ 22047729 (-) True G52009
TU69456 lncRNA upstream 84515 22053714 ~ 22055099 (-) True G52010
TU69459 lncRNA upstream 91513 22060712 ~ 22060924 (-) True G52013
XR_005639343.1 lncRNA upstream 110700 22079899 ~ 22080456 (-) True LOC120559667
TU69595 lncRNA upstream 273324 22242523 ~ 22243328 (-) True G52126
XM_039801645.1 mRNA downstream 638 21898157 ~ 21957314 (-) False huwe1
XM_039801650.1 mRNA upstream 853 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XM_039801654.1 mRNA upstream 853 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XM_039801653.1 mRNA upstream 853 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XM_039801651.1 mRNA upstream 853 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XM_039801652.1 mRNA upstream 853 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XR_005639338.1 other downstream 758909 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 1005434 20920699 ~ 20952518 (-) False LOC120558386
XR_005639107.1 other downstream 1005434 20920699 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other downstream 1005943 20883938 ~ 20952009 (-) False LOC120558386
XR_005639356.1 other upstream 4502 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 253950 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 560407 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1244899 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1244899 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile