RNA id: XM_039801698.1


Basic Information

Item Value
RNA id XM_039801698.1
length 2685
RNA type mRNA
GC content 0.46
exon number 9
gene id si:dkey-261h17.1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10867858 ~ 10906926 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCAACAAGGTTAAGGTCCCACCGACTGCGCTGAGTCTGACCAGAGAGGATGGCTGCGTCCATGTGGAGAATGAATGGGCTGTGGAGAAGGATGGCTGGACTTCTGGTGCTCTGCGCTCTGTTGCTCAGCAATGAGGTGATGTGTCAGGATGATGCAGCAACAGATCCCACAGATGCTCCAGACGCCACTGCAGTGACGGCCACTGCAGCTCCAGATGCTGCAGGTCCAGATGCCACAACTCCAGATACTACAGCTCCAGCTTCACATGCTGCAGATCCAGATGCTGCCACTGCTGCCCCAGATGTAGGTGCTTCTACCACTGGAGAATCTGCTAATCCCGCTGCCTCTGTAGATGATCCAATCCAAGCAACCATTGTAAACATTGTACTCGGCGACTTAGAGACCACTGCTGTCGTCACGGACGTCCCCCACACTGTGGTGCCTGATGTGATGTGCGTTGGAAAAGAGGACGTTCCAGAAAGTAATGCTGTCAAGGTTGAGTTGGCAACAAATGATTGTGAAGCATCTAAACTCATTTTAATGGCGAACCCTGCAGGCTGGTGCTCCAAGGAAAAGTGTAATCTAAAACTCTTCCAAGAAAGCAACACGCTGCTTGTGGCCAGTGACGATGCTCCGTTGGCGTCTTTGGCTAGAACACTCGAGAGTGAACATTTGAAAGACAAGCTGGGTGTGACAAAGACTGAGACCCCGTCATCATCAggttcctctgtctttgtgggAATTCTGGTCACTGGTCTGCTTGCCGCCCTTGCAATCGTTGTAGGTTACCTCAAATGCCCACGCAGGTCCGACGCCAAAGGAGTGAGGCTGGCAGAGGAGGCCTATCCAGCAGATCAGGAAAACCAGGGGAACACTCTTGTATCTGTGGCTCCCCTCAACCCCCCTCCGGAAACTCCGGAGAAACCCAGCGTAAATGGAGAGTCCCCCGAGGAAGCCAAGACCCAGCCTCCTCCTCCCACCAACGGCCACTCCACCACCAAGACAGCCGACACCGAGCTGTAAAATAATCCACACATAATTGCAGCCCAGGAACTACccccacaaacacaaacacacacacacacacacacacacacacacacatacacacacacacatgcctatGCAAATGCACCCCGCCCCCACCTTCTGCATCCACTCCTGCCTCCTTCACCACAGAGAGTCCACAGCAAAGTGGACATCAGGGACTAGAACTATTTCCTACATCAACGCTCCTCTTGTTATAGTCCTCTTGCCTCATTCTCTTTTGGCTATGTGCCGCAATAAACATCAGGAAAACTAGTCTGACGATTATGGCGGTGACGTTGGTGATGACAAAGGCTCGGTCCCTGAGTTGTTGACGGCAGTCAGGCTGGAGACGAGAGACGGGAGATGGGCAGCTCTGGGTGGGAAGAGAGTGTATTTTAGCATTAATCACAAACTGGTTCCCATGATGACTGCAGCCTCTGGAGTCACAGCCATATGTTGTCAACACACAGCAAGGGTCTCTGCATGTCATCAGGTTCAAAGCTCCAAGCAACCCGCCACTAGTAAATCCAGCATAAGCACATCAATGAAATTGTTCCTTAGTTTATTGTAAAGCCGTggcagacagagaggaaataAATCACTCTGCCTTTTAAATCTGTATACAAACTCGGAGAGAAAATCCATTGGGCTCTCatcttgtttgtgttattgAGTTATTGATCAGCGCGCgaatgtgtgtgctgctgtcaaatcctgcgtgtgtgtgtgtgtgtgtgtgtgcgtgtcaacGTATACTTGCATCTGTACTGTGTAATCGGCTGTAGGTATATCCATACATGCCTCTAAGCTTCCTTTgcttactgtatgtatgtatgtatgttgatAACAAGTGGTTGATTTTGATCATGTATGTGAGTGAACGATGAGTCCGAAATGTACATGAGACATTAGCCAgtgtacatttttgtaaaatgagTTGGTCCACCGAGATTCCCCATGGTGAGGAGGACAAAGTActaacgttttttttgtttttttttatcacaccATTTTCTTGAAAAGGGGTAGCCGCAAGGAATTCTCCAATCTATCACTGCAAACTGTATTGAAATCAATCAACCAAAGCCAACAGGCCTCTTTACAGTGGATGTATAGTCACTGCTGAAAATCATCCAACCAACCAACAGACTCCTAAAGGCCTCGGCGCAGGGCCTCGTACTGTCAACTGTTACTTTATCAGTGTTACTCTCTTTTTAATATTCTGTGTATGCTATTTTTCTATCCGTATTCTATTGTGCAGTGTGTATAGTATGATGACTTACTTTGTCCTGTTTTGATTTTGTGTACCAACACCTTTTTATGTGCCAAAGAATTTCTTTTCATATCTTATGGTGTACTAAAATATGTACTTCTGTTGCACCCCAAAtctgtgattttgtttttgtcctgtaaaagcattttattttttatttttatttttttactgaccTGAGATCGAATTAAAAAGGAAACTGCAATATCCCGTAGTCGACCTGGAACAAAGCAAAAAATATTCTGCTATATAAATGGGATGCTTCGCATTGATTTCTCCTTTTCGATCCATTTTGTATCTTTTCATTGCTAACATTCCAATGTGACTGTTtggattaaatataaaaaaaataaaaagcaaaggatgAATAACTTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639118.1 lncRNA downstream 2813 10834886 ~ 10865045 (-) False LOC120558410
TU65055 lncRNA downstream 7171 10834888 ~ 10860687 (-) False LOC120558410
TU65057 lncRNA downstream 9849 10838207 ~ 10858009 (-) False LOC120558410
TU65059 lncRNA downstream 9849 10838207 ~ 10858009 (-) False LOC120558410
XR_005639117.1 lncRNA downstream 9868 10834886 ~ 10857990 (-) True LOC120558410
TU65104 lncRNA upstream 253292 11149074 ~ 11149382 (-) True G48749
TU65111 lncRNA upstream 312612 11208394 ~ 11208617 (-) True G48756
TU65116 lncRNA upstream 325215 11220997 ~ 11221479 (-) True G48761
TU65282 lncRNA upstream 542490 11438272 ~ 11438701 (-) True G48891
TU65275 lncRNA upstream 608045 11503827 ~ 11508308 (-) True LOC120558961
XM_039800731.1 mRNA downstream 301383 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA downstream 301383 10542933 ~ 10566475 (-) True ptpn22
XM_039799833.1 mRNA downstream 542647 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800015.1 mRNA downstream 731477 10131691 ~ 10136381 (-) True LOC120558781
XM_039800013.1 mRNA downstream 758758 10094913 ~ 10109100 (-) True LOC120558779
XM_039800088.1 mRNA upstream 14036 10909818 ~ 11127866 (-) True plxna2
XM_039800089.1 mRNA upstream 35606 10931388 ~ 11129110 (-) False plxna2
XM_039800090.1 mRNA upstream 72227 10968009 ~ 11129310 (-) False plxna2
XM_039799550.1 mRNA upstream 441825 11337607 ~ 11348247 (-) True LOC120558517
XM_039799552.1 mRNA upstream 452504 11348286 ~ 11360195 (-) False slc48a1a
TU65038 other downstream 213040 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 842033 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1143724 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1169751 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 2761663 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 993159 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 1231104 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 1231104 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 1254012 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 1324955 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile