RNA id: XM_039801772.1


Basic Information

Item Value
RNA id XM_039801772.1
length 4063
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC120559773
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13535401 ~ 13559677 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCGTGGTAAGTGTGGCTGAATACGAGGCGAGTGTGCGCGCTACAGTAGTACCGGAGGATGAACATGGACCGCGGCTCCACAGCGGCTCCCCTCCCTGGCAAAAGCAGCTGGGGAGAAAGCTGAACTGGAGGTGATCAATATGCCGGGGAAGCTACACCTTATCGATACGTAAACCGGATAAAGGGAATGCAAAGATGACCGAGGGCAGACTGTGCCAAGTGCAGCTGCTGGATGACAGGAAGCTAGAGCTGCTGGTTCAGCCTAAGCTGCTGTCGTACGAACTCCTCGACTTGGTTTCCTCCCACTTCAACCTCAAAGAGAAGGAATTCTTTGGACTCGCATTTTATGATGACAATGGTCAACGTAAGTGGCTGCAGATGGACCGCAGAGTTCTTGAACACGACTTTTCGAAGAAGTCCGGGCCCATTGCCCTCAACTTCCTGGTCAGGTTTTATGTAGAAAACATAACACAGCTTAAGGACATCATAACGGTGGAGTTATTCTTCCTGAATGCAAAATCTGCTGTCTACAATGGGATTATAGAAGTGGAAAGTGAGAACGTCTTCAAATTAGCTGCCAATGCTTTGCAGGAGGCGAAGGGAGACTACACAAGTGATGAAAACACTAGAGGAGAGTTGAAGAAACTACCAACACTTCCCACCAAAGTACTCAAGGAACACCCATCACTTGCATACTGTGAGGATCGAGTAATTGAACATTACAAACAGCTGAAAGGAGTCTCCCGAGGACAGGCCATTGTGCAGTATTTGACGTTAGTGGAATCCTTGCCCACGTATGGCGTGCATTATTATGAAGTAAAGGATAAACAAGGGATCCCATGGTGGCTTGGAATCAGCTATAAGGGCATCGGCCAGTATGACCTGCAGGATAAATTAAAACCTCGAAAGCTTTATCAGTGGAAGCAGCTGGAAAACCTGTACTTCCGAGAGAAGAAATTTGCTGTAGAAGTTAATGATCCACACAGGAGAGCAGTAACCAAGCGGACCTTTGGGCAGACGGGCCTACTCATCCACACATGGTATGCCAGCCATTCTCTGATCAAAACCATTTGGGTCATGGCTATTAGCCAGCACCAGTTCTACTTGGACAGAAAGCAAACCAAAaCAAAATTAGGAATAGCAAGAAGTGTGGAGGAAATTGCCATGGATCTCACAGAGCACGGAGGAGCAAAAATACACAGACTGGGAGACGCAGGCCTGAAGAATAACTTCATAACTGCCAGCAATGGCAGCCTGGTGTCTACAGGTTCAGCAGACTCTGAAATGAGTGAAGAGCAGAAGAAAGAGAAACTCTCTGAACTGAGGAAAAAAGAGCAGGAGATCCAAGATATTTTGgccaagaaaacaaaagaactgAAGAAGATTTGCCTGAGAGAGGCGgAGCTAACTGGCAAGCTGCCAAAAGAGTATCCCCTCTCTTCAGGTGAAAGGCCGCCACATGTCAGACGGAGAGTTGGCACTGCTTTCAAGTTAGATGAACTTTTCCCCTACAATGAGGATCCCTTCCTGAGGAACCTGGAGAGCAGATTTGCCCTGCAGCGAAAGATTGTGGAGGCGGCTAAGAAGCTCGCAAATGAGCCAGAACTGTGCAAAacagtgaagaagaagaggaggagaaactgTTTGGATGCCATGCAAAAACTCCAGCAGATAGAGGATGAGATGAACCAGTATAGAATCAAGAAAGGGAAAACGCCCACACAGCGGGCCTCAGTGATCATTGCAGATGAACTCATCCGTTCAGACTGTAGCTCGCTGTCTAGTCTCCCACTGGATGATGATGACTCAGACGGTGTCAGTCAGAGGCCACGGTCACGGTCGGTCCAAGGTTCCCCTCAGCTCAGTCCGATGAGATCGCTGGGAGCAGAATATGATGTGGAAAGACGAAAGGGATCTCCGAGGGAAAATCACCAAAACAAGAACCACAGCAGATTAGCTTTTGAAGGCCAGGATGATTCCCACTACTACCAGAATGCAAGAGGGGTGTCCTCCACCCACAGTAGTCCCTATAAAACCCTTCCCAGACCTAGAGATCCACGCAGCATGCCTCCCACCCCGGTTATGACCCGCAATGCCTACAGCAGCAGCCAGCTCAGGTCGGAGGGGTCTCCTCATAGCTTCAGGCATCGCAGCGGGAGTCTGGAGTCACAGCCCCAGCTAAGAAAAGACACAGACTCCGAGAAGCCTGTCTTTATGTTGTCACCAGCCCACCGCAGCAACAGCACAGAGGTGTTAGAGGATTGCTCGTCCTACACCAGCCAGTCCAGTCTGGACTACTGCGGGGCGGCCAACTCCCACTACAGTACACTGGACTCCCGAACCTCAACCATGCATCGTCTCCACAGGAAGGTGGAAGTGTATGGAAAtactgggagtatgcccaacttGGTCCAGCACCATTCTGGTTGTAGTTATTCATGTGACACCTCACCACACTATGCACCCAGTGCCTACTACGTCGCCGGCTACCCCTGCCCGGACTTGGAGCCTTACTCCAACGGTGCCTACGTGTATGAGAATGAAGTAGAAGGCCACTACAACGTCAACCCTTCCTACCAAATAAATGGGTATCATGGACATGACAGATTCAGGAATTACAGCAGTGACCGGGCAGATAGTCTTTCTCAGAATCCCTACGCAACAGTGAGGCCGCCGCGGAATAGAGAGGGGCCCAGGAATGAGCTGTTGGCCAAGAACATGCAGAAGGCCCTGGTGGCGGAGCATCTAAAAGGCTGGTACCACCGAAGCAGGGGCcccagggagggagggagggggatgCTGGCTGGATATGACTTCGACAGCGGCTCTCAGCTCAGCCTGGGCTACCAGACCATGCCAGCAGCCTTCAGCCACTCCAGCAGAACCACTTCCTTTTCATCAGTGTCCTCAGTGGAAAGCACTGGTAACTGGCGCAACCAGCTGGCAGTTGGCCTGACCGAGTACGATACACCCGACACGCCTCAGTACCCACACCCTGGGGTGCCTGCTTCTCCGTACAACCGCAGTCCCTCACACAGCAGATTTCCTCCAGAAAACAAAGTGTCCGACACAATGCCTAAAAAATCTGAGTCAGTTGAGGTGGTTGGCTCTGAGGCCACTAGTACAGATGAACCATCAGACAACCACTCTAGCACTTAAGGATTTTACCTGGATGGAAGCTACATGAGCATCCGCTGAAAAGGACCAAACCAAACACTGGCACAAACAAAGCCATGGCCAGCAGCACATGACGGGggtgaagttaaaacacacatacacaaacatttgtTGCTGCCATAACCCTGTCTTGGGAGATATTCTGTCTGTTAGTTCTTTTTTTGGCAAAGTCTATGTGTACGCTGTCCTCATGTTAAAGTAACCTCTGAACACAGTGATGACACTCTTGAATGACTTTCCCATGTGCCTTGGATTGGAAGAATTGTACAGGCAGATGAGAATGTGTCAAGGAACTTTAAGATGTTGCACAACCACACTGGATTCAAACCCTATTGTGttttaaagatgaaaaaagaGGCAAAAGGAGGTGTTTTTACTGAAATCCAACTCTGTGTATTTTAGCAGGAACTAGCTACTGCCTTATACAAAACAGTAGGTTAtagaataaaaatgtttttcaccACTTTCATCCCAGTAAATATATAACATCCAAATTGAAAACAAAGCTTGAACATGTTCACAATGTGAAAGTACAAGAACTGAACTGATCAATCATTAGAGCAGACTGTATTTGATGACTATCCATTTCTTCCTTTCGTTAAACTTTTAATCAGAATATGTTCTGTCAATATTGTTTATAGAACCATTTGTATTTGTCGGTGGCgtaatgtgttttaaattgcATGGTaagaatataatttttttttttgataacttcTTTTTATATTAACAGAAGACCACTGCCGTAAAAAACACATATTCAAGTctcattgtttgttttctcacaCATCTGTACAGTGATGTGACGTTATATGTTGTTAGATGTTGTCATAAAATATTTTCCACTGGGAACCAGGAtgtgaataaatacatgtgtaACACATA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K23970 FRMD4; FERM domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66135 lncRNA downstream 102306 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 127958 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 156538 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 167028 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 177596 13355117 ~ 13357805 (-) True LOC120558463
TU66283 lncRNA upstream 95854 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 95854 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 187742 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 480058 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 559304 14118981 ~ 14125759 (-) True smim29
XM_039800754.1 mRNA downstream 486 13531879 ~ 13534915 (-) False lmod3
XM_039800753.1 mRNA downstream 487 13531879 ~ 13534914 (-) True lmod3
XM_039800755.1 mRNA downstream 8204 13520484 ~ 13527197 (-) False LOC120559206
XM_039800756.1 mRNA downstream 8204 13520484 ~ 13527197 (-) True LOC120559206
XM_039801896.1 mRNA downstream 15842 13510651 ~ 13519559 (-) True LOC120559852
XM_039801321.1 mRNA upstream 49640 13609317 ~ 13616046 (-) True mdfic2
XM_039801592.1 mRNA upstream 57199 13616876 ~ 13633635 (-) False LOC120559678
XM_039801591.1 mRNA upstream 57199 13616876 ~ 13633635 (-) True LOC120559678
XM_039800921.1 mRNA upstream 77386 13637063 ~ 13642433 (-) True LOC120559297
XM_039800922.1 mRNA upstream 77386 13637063 ~ 13642153 (-) False LOC120559297
TU66001 other downstream 281929 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1096676 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1143730 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1312399 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1366192 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 580703 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 972447 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1285661 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1285661 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2721367 16281044 ~ 16283856 (-) True G50217

Expression Profile