RNA id: XM_039801804.1


Basic Information

Item Value
RNA id XM_039801804.1
length 4328
RNA type mRNA
GC content 0.43
exon number 15
gene id nr2c2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16630572 ~ 16643870 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCGCGCGGGGACAcgacagagaggaaggagaaaaaaaccCTCAACCATCATCAATGCGCTGGCGGTGCGGGGTCACGAACTATGACCTTTAACagaagaaaaccaaaacaaatattttataaaatagcAGAGAGCCCGAAATCTGTGACCAGCGTTTCTCGGAGACCTCACTAATGACCCTTACATCATCATGACGACCAACCTGAATCTGCTCTCTCAGCAGAAAGTGGACTCTGAGCACGAGGCAGAGGTGTCATCGTCTCCTTCAGACTCAGTGATGAGTGAGTCTCCACAGCGCTTTCAGGTCATCTCCACTGAGCCTGCCACAACACCACAAAGGATACAGATTGTAACTGACCAGCAGACAGGTCAGAAGATCCAGATCGTGACAGCGATGAAGCCGTCCTGTGCTCCCAAACAGCAGTTCATTCTGACTACGGCCGACAGCTCAGGGGCTGGCAAGGTTATCCTGGCCTCACCAGACAGCCACAACACTAAGCAGCTCATCTTCACTGCTGCAGACAGCCTGATGCCAGGAAGGATACAGATCGTCACAGATCCAGTGTCAATGGAACGGTTGTTAGGGCAGTCAGGGGACTTGAGCCGGCCACAGCCAGTGGAGtactgtgtggtgtgtggggaCAAGGCTTCAGGGCGTCACTACGGAGCAGTCAGTTGTGAGGGATGTAAAGGCTTCTTCAAGCGGAGCGTGAGGAAGAACCTGACCTACAGCTGCCGCAGTAAACAGGACTGCATCATCAACAAACACCACCGCAAtcgctgccagttctgccggtTAAGGAAATGCCTTAACATGGGGATGAAGACTGACTCTGTCCAGAGTGAGAGAAAGCCAGTCGATGTAGTGCCCAGAGAGAAGCACGCCAACTGTGCTGCCTCCACCCAGAAGATCTACATTCGCAAGGacctaaacagtccgctcatcGCCACACCAACCTTTATCTCTGATACAGAGACAGATGGCTCCAGATCCAGCCTGCTGGACCAGGGCATGCTGGTTAATATCCAGCAGCCAGTCATCCAAAGTGATGGAACTTTACTGCTGGCCACTGACTCAAAGATGGATCCTGGGCAGGGAGACTTGGGGACACTAGCCAATGTGGTAACATCACTGGCAAACCTGAGTGACTCACTAAGAGAGACTCTAAACAATGGTGATACCTCAGACAGCCAACATGAGGAGCAATCTGCCAGCGAGATAACACGTGCCTTTGACACCCTGGCCAAAGTTTTCAACCCACCTGAAGTAGGGGTTGGACTGAGTCTGGCAGATAAGCCTCAGTGTGTCGGTGGAACAACCATCCAGCTGATTGGTCGAGACCAGGAGACCCCCATCATTGAGGTGGAAGGACCACTGCTCACAGACAGCCATGTTGGCTTTAAGCTGACCATGCCCAGCCCCATGCCCGAGTATCTGAATGTACACTACATCTGTGAGTCAGCATCTagacttctctttctctccatgcACTGGGCACGCTCTATCCCTGCCTTTTCAGCTCTTGGtcagGAGGCAAACACCAGTTTGGTGCGAGCCTGCTGGAATGAGCTGTTCACTTTGGGTCTTGCTCAGTGCGCTCATGAGATGAACCTGTCGACCATCCTCGCTGCCATCATCAACCACCTTCAAAGCAGCATCCAGGATGACAAGCTTTCGGGGGAGAGGGTGAAGCAGGTGATGGAGCACATTTGGAAGTTCCAGGAGTTCTGTAACAGCATGACGAGGTTGGAGACTGACAGCTACGAATATGCCTACCTGAAAGCTATAGTGTTGTTCAGCCCTGATCACCCAGGTGTGGACAGCAGCGGGCAGATTGAGAAATTCCAGGAGAAAGCCTTGATGGAGCTGCAGGACTACGTGCAGAAAACCTACCCAGATGACACCTACAGGTTGACCCGCATCCTGACCCGTCTCCCAGCCCTGCGCCTCATGAACTCGGGCATCACAGAGGAGCTCTTTTTCACTGGCTTGATAGGTGATGTCTCTATTGACAGCATCATTCCCTACATCCTCAAGATGGAGACGGCTGAGTATAACAGCCAGGACTCTGACCCTACAGAATGACACCCCATCACTCCAGTACCCAGAACTGTCAAATTAAAGATTAGCGAGTCTCCACTTCAGGTACTCTTATTTGTCTCTCGTGGGGATTACCGTTGAACCCCAGTTTAAAGTTCTGCAGCAGCCCCATGTTTTGTAATGATGCATGGTGCCAAGTCATTCAGGAATCCTTGGTAGATTAAGATAATTGGGGATTAGAAAACCAGGATGACACTTGGAATGTTTTCTGGAGCTGACACAGTGTGGTATTCTTACATTTCTGGCTCTAAACTCAGTACATCTGTACTGAATGGAAAAGGAATCCTCTGCAGCTGCAACTGTTCTAATCTCCTTTAATGCCTTTATGGCACTTCAAGCTAATCACATATGTAGCCTATTTTACTTTTTGACCTAAGCCTTTCAAATTGTCGTAGTCTTATCTAAGCCTTACCATGCTCTCATATTTATCCCATACATTATATCGCATTAGGTTGCAGATAATAGATGAGCTGTATCGACAAGCTCAAACAGAAATCTTACATGTGAAAGTGAAATTTCACCTATTTAAAAGTCTAAAGACTAAAGTAAAGTCCTTACTTTAAAAGTGTACTTTGAAGCTGTTaagtatttgtttatgttgcTATTTTGGAACATTGGAGCAGTATAAACTGGTATTTGAATGAATGTGCTGCTAAATTGAGAATTCAGGCTATTACAAAAACTTAGGTATGACTTTTCTGAACGTCATACCACAAGTAATAGTAACATGCTGCAATGATTGTCTCTCTTTTCAGTTTTGAAATTGACACCATTTCCTCAAAGGTGAGAGACATTAATGTACAGTTCtttactttaaatacatttaaataatagtTAGAATGAGAACTCCAATCAGGTACAAACACTAACTCAAACCTCAATGAAATAGTCCTTAATCTGTATTCATATGGACTGTCTTTCATAGCATTTATCTACCACACAGTGCATTACAACATGACCTGATTTCATTCAGTTTCACTTTTAACTCGCATTCACAAAGCAACAATTAGCCAGTTAAGATGaccattatgtgttttttttatactgaaTGACATCTCAGAGATTTTAGCTTTTGGAGTACACTTATTTCTAGATTATCATGAACATGTTGCTAATATAACCTGTGCAATCACTTCATCACTTTTCCCTTTACGACAATCAATTTGTTATTTCCTTCTGTCCCATCAGTGTCATGACAATGCTTCTCACTCTGCATTTTGTATATTTATCagtggcagttttttttttttttttttaagatttgtgGTTCAGAAATGTTACTTATGTGTAGCTATGCTACTGTTTTTGtacttgtgtttgcatttgtaCTCTTAAGTGTGCACATCAATCAGCCTCCGTGTTCATGCTGACTAATACTTTGggttttctgtgttttctaaaaactttaatttgttgcaTACTAAGTGTACTTAAAGTACTTTTGGGCAGGTTTCCCTGATTTAAAAACCCCCCAGCTCTTCTAGGAAGCCAGTCTCGAGTGCGTCTTAAAGACCTTATTGAGACTTGCATCGGCTCACCCTCTTGTATAATGGCTCAGAATAGACATTCACAGCAACATGAATGATAACAGGAATGTAAAGAAGTCAATAATGATTATGTCttgttaaataaatgtcaatTGTAATATTTGGGGTTTGAAACCCGTACAGACTGTTTATAAAGGCACTGTTGTGAAATGACCTTTGTACATGTAGTTTCATTAAAATGAGTGCATGTTGTTTTTAAGCTGGGTTTTATAATCTTGTCGCTGTTTGCCCTAAAAACAAGCATTGTTATGAAATTTTATAGTGCATTGCAGTGCATGAAAAAATTGCTTAAGTGCATTTTATTAAATgctatttgaaaatgtttatttaaatgttgtgGCTTTAAAATATTTACCATGAGCAGCTCCCACATTAGAGGATATTAGATTAGCAAAATTTTTGTGTGTGGATTGAGTATCCTATGGTTAAAATTTTATACGATGTAAAATGTACTTTGTTTTTCTGCtcatgtaaaatgtatttcttcAAACATTGAGATTGAGAAACAACATTCATGTTTTTCTCAAGTTTGTCATGACCCCACATTTCTACCTCACACCGATGAAAATATAACACAAATGTATTAAAGACTAAGCTCCTGTATCAGCATTCCAGTCTCTGAGTCTGGCTTCTCTGAAGCCACACActataaaagaaataaacaattatGAAATATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67316 lncRNA downstream 49590 16580076 ~ 16580982 (-) True G50371
TU67178 lncRNA downstream 211959 16416921 ~ 16418613 (-) True G50278
TU67119 lncRNA downstream 250949 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA downstream 250949 16373144 ~ 16379623 (-) True G50230
TU66980 lncRNA downstream 673900 15952530 ~ 15956672 (-) True G50143
TU67324 lncRNA upstream 17128 16660998 ~ 16663045 (-) True G50378
TU67328 lncRNA upstream 22180 16666050 ~ 16679676 (-) True G50382
TU67335 lncRNA upstream 70191 16714061 ~ 16714748 (-) True G50389
TU67417 lncRNA upstream 300901 16944771 ~ 16944972 (-) True G50443
TU67455 lncRNA upstream 419948 17063818 ~ 17064746 (-) True G50476
XM_039800557.1 mRNA downstream 2154 16626127 ~ 16628418 (-) True mrps25
XM_039799897.1 mRNA downstream 53486 16528518 ~ 16577086 (-) False tmcc1a
XM_039799895.1 mRNA downstream 53653 16528518 ~ 16576919 (-) False tmcc1a
XM_039799894.1 mRNA downstream 53653 16528518 ~ 16576919 (-) False tmcc1a
XM_039799893.1 mRNA downstream 53653 16528518 ~ 16576919 (-) False tmcc1a
XM_039801227.1 mRNA upstream 6027 16649897 ~ 16658802 (-) True wdr46
XM_039800424.1 mRNA upstream 41437 16685307 ~ 16706539 (-) True LOC120559001
XM_039801228.1 mRNA upstream 62281 16706151 ~ 16709768 (-) True ogg1
XM_039801229.1 mRNA upstream 62628 16706498 ~ 16709769 (-) False ogg1
XM_039801204.1 mRNA upstream 82107 16725977 ~ 16730653 (-) False LOC120559488
TU67071 other downstream 346716 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1776755 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1776755 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2095967 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2485350 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 1044245 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1195674 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2236495 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3055903 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 3057460 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile