RNA id: XM_039801810.1


Basic Information

Item Value
RNA id XM_039801810.1
length 1479
RNA type mRNA
GC content 0.51
exon number 6
gene id mul1b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9978253 ~ 9985133 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATACTGACATCTGCTGGCAGGGAGGAATATTACATTTcaagagcttttattttgaattgtgGAGATTCGCAGCTGTTGTTAAACCTCTGTTGACAGTGGGACGAGTGTGAAGTGAATACAGCAGTGAATGCTGCAAATCACAGGAGGATGGACTCCAGTGGGAAACCCTCAACTGCACAGATCGTGGTTTTAGCCACCAGCTCAGCCCTGACTGCAGTCTTCTATTCCATTTACAAGAGCCGAGCTACAACGGTTGCCAGATTAAAGGAAGCCAAGAAAGTCTCCATTGATCAGGATTTAAAAAACCTCCTGTCTGAAACTCCTGGACGATGTGTCCCATATGCTGTCATAGAAGGTGTAGTGAGATCTGTGAAGGAAACTCTGAGCAGCCAGTTTGTTGATAACTGCAAAGGTGTGATTGAAAGACTGACCTTGAAAGAGGAAAAGATGGTGTGGAATCGCACCACTCATCTCTGGAACAACACAGAGAAAATCATCCACCAGCGCACCAACACCGTTCCCTTTGCCCTTGGGTCTCACGACGACGATATCGCCGCCACAGTGCGGGTTATACGTCCGCTAGACGCTGCCGAGTTGGACCTGGAGACCACATACGAGAACTTCCACCCCACGGTCCAGTCCCTGTCCAACGTTATAGGCCACTTCATTAGCGGGGAGCGCCCCAAGGGCATCCACGAAACGGAGGAGATGCTGCGGCTGGAAGACAGCGTCACAGGCGTAGGCGAGCTGGTCCTGGATAACAACCTGATCAAGCTCCAGCCTCCCAAACAGGGCTTCCGCTACTTTCTCACTCGGCTGGACTACGAGTCTCTTCTCAGGAAGCAGGGGAACAGTGTCCGGCTGTGGCGGATTTTGACCGTCGTCTTCGGCATCGCCGCGTGTTCCACGCTCCTCTTCATCCTGTGGAAGCGATACGTGCACCACCGAGAGAGCAAGAAGGAGAGAAGCATGCTCGAGGAGTTCAAGGAGCAGCAGAAGAAACGCATGCGTGAACTCAACGTAGAAGAAAGCAGCGTGACGCCCACCAGCTGTACTGTCTGCCTGAGCCGGGAGCGGTCCTGCGTGTTTCTCGACTGTGGCCACGTGTGTGCCTGTGCCCAGTGCTACGACGTCCTGCCAGCGCCAAAGAAATGCCCCATCTGCAGGGCAACAATAGACAGGGTGGTGCCTCTTTACAACAGCTAATGTACAGAAATATGTGCAGCGGGTGCTTGGGCTCTACAGACATTCACCACCGAGTACACTGAGCAAGTGGCAGCACATGTTCAGCAAAGTGTGCTGAACAGAGGAGATCTCTGTACCATCACAGCCGCTGATTGTTGGACATTTCCTGGGAcattggcaaaaaaaacaaatcattgtCTGTTTGCAGCTGAAAACGTATTAAAGACAAATACAATGTAGACTGCATACTCAATCATTgtgtaaaataatattaaagaCAAATACAATGTA

Function

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64726 lncRNA downstream 59374 9916578 ~ 9918879 (-) True G48477
TU64729 lncRNA downstream 84427 9892968 ~ 9893826 (-) True G48479
TU64692 lncRNA downstream 193012 9783714 ~ 9785241 (-) False hipk1a
XR_005639087.1 lncRNA downstream 212064 9764068 ~ 9766189 (-) True LOC120558310
TU64671 lncRNA downstream 215804 9760890 ~ 9762449 (-) True G48436
XR_005639099.1 lncRNA upstream 29270 10014403 ~ 10018354 (-) False LOC120558372
XR_005639098.1 lncRNA upstream 29270 10014403 ~ 10017139 (-) True LOC120558372
TU64766 lncRNA upstream 29834 10014967 ~ 10016118 (-) False LOC120558372
TU64777 lncRNA upstream 37995 10023128 ~ 10023993 (-) True G48522
TU64856 lncRNA upstream 314411 10299544 ~ 10299879 (-) True G48569
XM_039801489.1 mRNA downstream 45061 9925177 ~ 9933192 (-) True zgc:193690
XM_039800987.1 mRNA downstream 62118 9904308 ~ 9916135 (-) True ints11
XM_039799252.1 mRNA downstream 76595 9890555 ~ 9901658 (-) True LOC120558325
XM_039799742.1 mRNA downstream 96557 9787365 ~ 9881696 (-) False LOC120558654
XM_039800013.1 mRNA upstream 109780 10094913 ~ 10109100 (-) True LOC120558779
XM_039800015.1 mRNA upstream 146558 10131691 ~ 10136381 (-) True LOC120558781
XM_039799833.1 mRNA upstream 331686 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800731.1 mRNA upstream 557800 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA upstream 557800 10542933 ~ 10566475 (-) True ptpn22
TU64679 other downstream 254119 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 280146 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1790702 7771936 ~ 8187551 (-) True G47934
TU64778 other upstream 39861 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 657586 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 1903808 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2141753 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2141753 12126886 ~ 12128425 (-) True G49083

Expression Profile