RNA id: XM_039801820.1


Basic Information

Item Value
RNA id XM_039801820.1
length 1906
RNA type mRNA
GC content 0.55
exon number 11
gene id wasb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12722054 ~ 12728769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTCCGTTTCCTGCTTTCAGTTGATGTGTGCGCAGAACAGAGAAGAGAAACTTCCTTGAATGGAGAGCTTAGCATTCTGACAGCGTAGAGAGGACGCATTTCAACAAGTGCTGTACACATGAGTTTAAGATAAACTGGGAGATTTATTACGAGGACCATGAGCCGTGGATCTAAAACTAAAACGGAGAGCGCTTTGAGCTCTCTGCTGAGCCCACAGGAGACTGAGAAGTTGGAGGAGCTGCTGGGCAGAAGGTGTATTtCCATGGCCACTGCGGTAGCACAGCTGTTTATGGCTCTGCCTCACAGCCCTTCCATGTGGAGCTTGCAGCACACTGGAGTGGTGTGCTTCATCAAGGACAACCCTCAGCGCTCCTACTTCATACGCATGTTTGATTTGAAGACAGGGAGGCAGGTTTGGGAGCAGGAGCTCTACAACCAGATAGTTTACTCCTCGCCTCAGCCCTACTTCCATACCTTTGCTGCGGATGACTGCCAAGTCGGACTGAACTTTGCAGAGCAACAGGAAGCAGAAGCCTTCCAATATGCTGTCGAGGAAAAAATCAACCAGAGAAACAACCGTACAGATAGGAAACAGCGCCCCCCGCCGCCGAGTGACAGAGGTTCCCTGCCTCCAGTCCCACATGAAAAAGCTTCACCTGGCAGCCCTGGTTCTCTTCACATTGCCACAGTGGACATCCAAAACCCAGATATCCATGCTTCACGCTACCGCTCTGTCCCTTCACCGGCTGCTTCCTCCCTTCTGGTCGGCAAAGGAAAGAAGGACAAGAAGAAAGGGAAAAAGGGCCCTAAACTCTCCAAAGCAGACATAGGGGCACCCAGTGGATTTAAGCATGTTGGTCATGTGGGCTTCGATCTCAACAACCTGGACCCTGATCTGTGGAACCTGCTCTCCCAAGCTGGGATCAGTGAAGATGAGCTGAAGGATGAAAAGACCTCCCAGCTCATCTATAATGTCATCGAGCAGTCCGGAGGCATGGAGGCAGTCAAAAGGGAGGTGCACAGAGCTGGTGGACCTCCACCCCCTCCACCTGGCAGACAAGGGCCTCTGCCCCCAGTGCCAGGCTCCAGTCCCTCTGCTCCAGCCCCTCCACCTCCGAGAGGCCGCTCTGGCCCACTGCCTCCAATCCCAGGCCAGTCCCCGCGAGGAATCCCGCCCCCGCAATCGCCTCCTACACGCGGAGGCTTGCCACCCCCACCTCCGCCGACAAGCAGAGGTGGTCCTCCCCCGCCGCCGCCCCCAGCGCACTCTGCACCTTCTCACTTCCCCTCAGCGCCGTCCTCAAAGCCCTCTCCCGTCTCACCCTCTATCTCCTCCCACAAcctgcctcctcccctgccGCCGTCCGGCCCACAGCGCTCCGCGGGTTTCCCGCCTCCGGTCCCATCTACACCCAGCAGAGCAGGAGGAGgccctccacctccccctcctccGCCCCCTCCACCTTCCCAAACCATGTCTTCAAATTTCCCAGCTCCTTCTCGTGTTTCTGGTGGCCAACCCCCACCTCCTGTCCCTTCATCTGAAGGAGCGGGAGAAAGCAGAGGAGCTCTGCTGGATCAGATCCGACTGGGGAAGAAGCTCAGAAATGTGATAGACAGTCCTGATGCAGCTCCACCCACACCATCAGATTCAGGCGAGGGCATCGTTGGTGCCCTCATGATGGTCATGCAGAAGAGGAGTAAAGCCATCCATTCCTCTGaTGAAAGTGAAGATGAGGGTGGAGATGAAGACGACGATGACGACGAATGGGATGACTGATGACAGAAGTTCTCGTTTGCGTGGATTTAGTTCAACTGTGATTTTTGGTTATAAACCTCTGAATTGCAATACTGGTACATGTTTGATTTCAGGTTCAATAATTGATAATAAAACTGGAATATGA

Function

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K05747 WAS; Wiskott-Aldrich syndrome protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65826 lncRNA downstream 17949 12700429 ~ 12704105 (-) True G49307
XR_005639121.1 lncRNA downstream 60812 12660452 ~ 12661242 (-) False LOC120558434
TU65777 lncRNA downstream 60814 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA downstream 60814 12660048 ~ 12661240 (-) False LOC120558434
TU65658 lncRNA downstream 334830 12383502 ~ 12387224 (-) True G49183
TU65916 lncRNA upstream 40051 12768820 ~ 12771419 (-) True G49372
TU65921 lncRNA upstream 47148 12775917 ~ 12779320 (-) True G49374
TU65931 lncRNA upstream 108751 12837520 ~ 12839132 (-) True G49384
TU65959 lncRNA upstream 192232 12921001 ~ 12924328 (-) True G49407
TU65973 lncRNA upstream 477598 13206367 ~ 13221242 (-) False camta1a
XM_039799435.1 mRNA downstream 24997 12685286 ~ 12697057 (-) False LOC120558430
XM_039799433.1 mRNA downstream 24997 12685286 ~ 12697057 (-) True LOC120558430
XM_039799439.1 mRNA downstream 42389 12674387 ~ 12679665 (-) True LOC120558433
XM_039799440.1 mRNA downstream 43479 12674387 ~ 12678575 (-) False LOC120558433
XM_039800100.1 mRNA downstream 86504 12614941 ~ 12635550 (-) False LOC120558830
XM_039801822.1 mRNA upstream 623 12729392 ~ 12739824 (-) False LOC120559801
XM_039801821.1 mRNA upstream 623 12729392 ~ 12738587 (-) True LOC120559801
XM_039801824.1 mRNA upstream 623 12729392 ~ 12735973 (-) False LOC120559801
XM_039801819.1 mRNA upstream 11972 12740741 ~ 12744322 (-) True apex2
XM_039799523.1 mRNA upstream 168024 12896793 ~ 12915083 (-) False ccdc187
TU65695 other downstream 283329 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 330383 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 499052 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 552845 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 593629 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 523643 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1411611 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1803355 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2116569 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2116569 14845338 ~ 14853817 (-) False G49845

Expression Profile