RNA id: XM_039801822.1


Basic Information

Item Value
RNA id XM_039801822.1
length 2460
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC120559801
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12729392 ~ 12739824 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTCCCCccatttttctctttcctcttacAGTGTCAGGGAGCTTCATGGCTCTGCGAGAAGCAGATTTTGGACGTGAACCAGCCAACAAGTTTTAACTTTTACCCTCTTACTTCTGTCTAGACTGAAGACATCCATCTGACTGTTACTAGAGAGGTGACCGTTTGAAGAGGATTCCTTTAGCCTAGCAAAAGTAGATCTCTCAAGTCACAACGCCAGCAACCAGAATGGAGCTTCAGAAGATGAATGGACACAGCAGGGAAGATGGGTTTGATGGGCTGGATACCTTGGCTGAACATGAGGAGTTTCTCCCACATAAAACTGGCGTCAAGAAAGAAAACCTCTTTACAGATTTCGAGGGAAAGACTTCATTTGGCATGTCCATTTTTAACCTCAGTAACGCCATAATGGGCAGTGGAATTCTGGGCTTGGCTTTCGCGATGTCCAACACCGGAATCATTCTTTTTCTAATCCTCTTGTTGTCCATTGCCATTCTGTCTGCATATTCAATTCATCTCCTACTGAAAAGTGCTGGAGTTGTTGGCATCCGGGCTTATGAGCAGCTTGGGAATCGGGCTTTTGGTGCCCCGGGAAAAATGCTGGCCGCAATCATCATTACAATACACAACATTGGAGCAATGTCCAGCTACCTCTTCATCGTCAAGTCTGAGCTCCCACTGGTTATTCAAGCTTTCCTGGGTAAATCTGAAAACACAGGAGAGTGGTTCTTGAATGGAAACTACTTGATCATGATTGTTAGCATTCTCATCATCCTTCCTCTAGCAATGATGAAACAACTTGGTTACTTGGGCTATACAAGCGGGTTCTCCCTCTCCTGCATGGTGTTTTTTCTGATTTCGGTTATCTACAAGAAATTCAACATCCCATGTCCACTGGATAATGAAAATCATAACATGACTCCTAATGCCCATTACCACACTGCCACTAATGGGACAGATGACTTCTGTGAGGCCAAACTATTTACCACGAACTCACagACAGCGTACACCATCCCAATTCTGGCCTTCGCTTTCGTCTGCCACCCAGAAGTGCTACCAATCTATACTGAGCTACGAGATGCCACCAAGAAACGTATGCAGGCCGTTGCCAACATCTCCATCCTTGCCATGTTTGTCATGTACCTGCTAACGGCTCTTTTCGGTTACCTCACTTTTTATGGTGCTGTGGAGTCAGAGCTGTTACATACCTACAGTCAAGTGGACACCCTGGATGTCCTGGTTCTCTGTGTGCGTCTAGCTGTGCTGGTGGCCGTCACTCTCACCGTTCCCGTGGTTCTTTTCCCGATCCGCAGGGCCTTGCTCCAGATCTTGTTCCCTGCCAAGCCTTTCAACTGGTTGGTACACATCGCCATTGCATTTTGTCTAATTTTTGTGGTCAACCTCCTGGTTATCTTCGTGCCCTCCATCCGCGACATCTTTGGCCTCATCGGAGCCACATCTGCCCCCAGCCTTATCTTCATCCTACCTGGAACCTTCTACGTCCGTATTGTTCCTGAAGACCAGGAGCCTTTTCTGTCCAGACCCAAGATTCAGGCTGCATGCTTTGCTGCACTGGGATTCATCTTCATGATCATGAGTTTGTCGTTTATCATTATTGACTGGGTGACTGGCGAGTCTCGAAGTGGAGGCGGGCACTAGCAGTCGTGACTGAACAGAGATACTACCAACAGAAGGCCAACCAAAGTTCTCCCTGTCATTAAATTACCCCATAATCTGCAGAGTATTCATCTAAAGCCTACCAGGAAAGGTTGGCTGCACAAGACGAAAGATAAGTGAAGAACCTTCGCCTACAACgaaaaaataagtgttttgaCATGATGGGGCAGACAAAAGGCCCTGTACTGAAGGAGATGcatgaaaatacaaatacatttgttttctgACTGAATAAAATCTCTATGTCACGCCTCACAGTAAGGATGTTGTTTGGAGGCATGTGTAGAAATGCAAAAGacagcaaaaggtttaatgggAACAGCATGACTCAAATGGAAATCCCATTTTAGAGTATGGATGTGTACAGTTCCATGGAATAGCTCAGTCACTGCCAAAATCCTTCCAGTCCACTTCCTTACTGTCTCAAATCTCATAGGACAGAAATTTGTATCGGAAGGCGGTTTGCgtacaaaaaacatttcagtttgTTCCTCCATCAGTTGCTGTTTGATAATACATTTAGGACTGTAAAATCTACTGGTGCTGTATTGTCCAAATTTCCCCGAACTTCAGCTTAATATGACCAGAGAGGATTAGTCTGCAGTTTCACACTAACCATTCCAATCTACCAAAGTACAAGTTTGATGACTTTTACATGaagttttattaatgtttttaatgtgatatttttttgttaatctATTTTGACACTTAACATTACTGTTGTGAGGGGATCGTCTTCAAAGCTGAGCCTGAGGAGATCTTTAATAAATAATCCAACCGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65826 lncRNA downstream 25287 12700429 ~ 12704105 (-) True G49307
XR_005639121.1 lncRNA downstream 68150 12660452 ~ 12661242 (-) False LOC120558434
TU65777 lncRNA downstream 68152 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA downstream 68152 12660048 ~ 12661240 (-) False LOC120558434
TU65658 lncRNA downstream 342168 12383502 ~ 12387224 (-) True G49183
TU65916 lncRNA upstream 28996 12768820 ~ 12771419 (-) True G49372
TU65921 lncRNA upstream 36093 12775917 ~ 12779320 (-) True G49374
TU65931 lncRNA upstream 97696 12837520 ~ 12839132 (-) True G49384
TU65959 lncRNA upstream 181177 12921001 ~ 12924328 (-) True G49407
TU65973 lncRNA upstream 466543 13206367 ~ 13221242 (-) False camta1a
XM_039801820.1 mRNA downstream 623 12722054 ~ 12728769 (-) True wasb
XM_039799435.1 mRNA downstream 32335 12685286 ~ 12697057 (-) False LOC120558430
XM_039799433.1 mRNA downstream 32335 12685286 ~ 12697057 (-) True LOC120558430
XM_039799439.1 mRNA downstream 49727 12674387 ~ 12679665 (-) True LOC120558433
XM_039799440.1 mRNA downstream 50817 12674387 ~ 12678575 (-) False LOC120558433
XM_039801819.1 mRNA upstream 917 12740741 ~ 12744322 (-) True apex2
XM_039799523.1 mRNA upstream 156969 12896793 ~ 12915083 (-) False ccdc187
XM_039799520.1 mRNA upstream 156969 12896793 ~ 12915081 (-) True ccdc187
XM_039799524.1 mRNA upstream 156969 12896793 ~ 12914271 (-) False ccdc187
XM_039799522.1 mRNA upstream 156969 12896793 ~ 12914265 (-) False ccdc187
TU65695 other downstream 290667 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 337721 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 506390 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 560183 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 600967 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 512588 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1400556 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1792300 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2105514 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2105514 14845338 ~ 14853817 (-) False G49845

Expression Profile