RNA id: XM_039801896.1


Basic Information

Item Value
RNA id XM_039801896.1
length 3707
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120559852
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13510651 ~ 13519559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAAGTGGCCGCATATTGTCCGGGGGGACAGATGGTTTCTGTCTTGATTAAGTTTTAATTTTCCTGACGGGAAAAGCTGGCAGGCTTTGCTCGTCGGAGGGACCCTGCTGTGTTCACAGACAGACCAACGTATCTCTCGCATCTCATTCTGCCCTAAAAAAGGTCGCCTGTAGTCCAGGTAGAGGAGCTCAAGTGTGAAAGTGCAGGTTTTCACCGAGCTGACTGCTCTCTCAGCTGGGAGTTATTTAGCAGCAGACGGGCGTCTcgcgacttttttttttttgtgtctctcGCTTGTACACCGCTCTGAATTGAGGCAGAACACTTCTGAAACTGGTGGATCATATCAACTGCAAACTTTTGCATCCTGGCTGAAACGATCACAGTATGCATGATGTAAACTCAGACACTGGAGGCTTCTGCAGCGGCTTATCATTCATATCAATAACCTGAGCAGAGGCAAGATGATGCTGAACATGTTGGCCCGGCCATTACACTGGAGCCTCCTGCTTCTTTGTATAGTAGGCTTCTGCAGCCAGCTTGTGTCCACTGGCAACCAAAGCTCCCGAGGACAGACAGGGTCGTCGCAAGAGAGGACAGGGACTTGTGAAGTGGTTGCTGCTCATCGTTGCTGCAATAAGAACAAGATTGAGGAACGCTCTCAAACTGTCAAGTGCTCCTGCTTCCCAGGACAGGTGGCGGGGACAACGAGGGCTCTGCCCTCTTGTGTGGAAGCCTCTAttgttcatcacaagtggtggTGTAAAATGGAGCCGTGTCTGGAAGGGGAAGAGTGCCGAGTTCTCCCTGACCTCACTGGTTGGTCATGCATCTCTGGAAATAAAGTAAAGACCACAAAGGTGGCACGGTAGCAAGACAGGAGCTCCATCTAATCAGTACAAGCCTGTTCCGGCCTGGTGCAGTCACCTTAAGTAACACTGGACTCTGAAGACAGTGAACGCCCCATCAGATAGTGCAAAGAACAATATAGATTTAATTAGATATCTCCTGGCTAAGCTTTAAACTGCAGGAACACATTATTTTAATTTCCCTTTTGTTTGAACACAATTTTGGTTAGGGTTAATCCCATGCAGTGGACAATCTAATAGCAACTGACTTAAGATAAAATGAAGCAGCACCCTTAAGCAGTCCAAACAGGCAGCGACTGCAAAGGACTGTATCCGTATATTTCCGTGCTTGATATGCTGGGCACTATGTGATGCACTCAATCAAAGTTTGGACGGGGCCTGCTGGCAGACACTTAAAAAGAGATTTTGTGGATTTTCCGGCAGCAGAATGTGAATCCAGTCAGTTGCTTGTGACTCTCTCCGCCGATCAAAGCAGAGGACCACAAATACTGAGGAATTTATGATTGTGTAGCATTTGTAAGCAATGCTGTCCTGTAGACTTACTCTGAGCATTGTAAAGAGGTCCCATCCCTTTGGACAACTCCTTACCACAAAGAGGCACCCTCCCAAACacgcctgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacactgcttTTCATCTCCACTGCTTGGACAGGCCACCACCTGCAAGGCTGTGATGGCATGCACACAAGCATGAAGCGCTGATGCAAAAcaaggactgtttgaaatgctAATCATgggcagaaaagggagagagagaagagaagaggagcttCTTCACTGCTGAGAGTATTTACATCATGCTTTTGTTTGTCTCTCTAAACTGAATACTCCTGTGGAGGGAACTCCGTTCATAGTAATGATAGCAGCATTGCAGATTCTCTGCCTTGAAGCAAATTGTAGCCACCAACAGAAAAGAATATTTACCGTTATTGCATTATATCAGTTGTCCTCTTCATATGAATAATATTCCTTCTGGACTACCCCTCTTTTATCTCTTAAGTTCAATCAACTTTTAGCATTTTACCTTTCCAATAAAGAGACATTTTATAATAACACTAATAGAGCAACTGAAAATCATCCTATCTGAGGCATCAGACTGTGCTAGTTGAAGGCAGCTGAATTCTAAGCACTTTGCTCAACATTTACTTAATGCAATCATGCCGTATGGTTGTCATGGTACTGACAAGATTCTTCACTGAGCGGTCACGCACTCCAAGGCACTTTATGCATGGCTTTGCTTTGTAACTTTGTAACTTctgattattatttcatgttagAAGTGCTGCATTTTAAGATTCATAAAATGAACGGTATTGAATGTGTCAAATATTCTGGAAAACCCCCTCCTCTAAATCAATGATAATCTGCCTTTGGTATTGAATGGCAATGCTTTTGTAGATTCACTGAATGCTTATCGTATAACAAATTGTGATTCTGTTCATGGACATCGTAAACAGCAGCAATGTCTCCAACATAACTGTGTGTCATATTGTAGCTACTCTTATAAACCCATTAGAAGCTTGTGATGCAGCTGCTGACAACGGTATTATAAGCAGGGTCTGACAAGATCAGCCACATAAAGTAGTAAGATGGCGGTTCAACATATTGTTTACAAAAGACCTTGGGTGTATTTCATTTGAGAGCTGACTGCAAAACAGGGGGATTCAATACTCCTTACAATATAATACAAGCCTCTCCATCCATGCCATAAATGACTATAAATGATGACTAATAAACATTACCTTCACCTCTCTGGCTCAAGATACAgctgttgtattgtattgtaccCTGTTTAGGATTTAAAGGAGTGCTACAATGACCTGCGCTTAAACCGCAATTATTCAGTATTATTTCAGAACATCTGGACTAGATACATTATTAAACATATAACTCCCCCTTTTAACTGTTCAAaccatttttcaagcaaaaaaatcACATGGTCATCATGGTTCCAGCATCTCagttgcttttctttgtctaatTTGATGGTAAATTTAATATCTTTAGGTTTTGGAACTTAAATCAGGCAAAATAAGCACACTAAAGACATCAACCTGGGCTTAATGAAATCGTGATAGGCAATTTAATTTTCTGGCAATATTTAGTCCGAACGATTAATCACAAAGAATCACGACAGATGAAATGATAATGACAATAATCGTTTGTTGTTTTCATAATTTGTCACTTTTGATTTTGTTCAGTTTTGGCAACTGAAGCTTCTCTTAAATGCTGGCCAAAATCTTGTTAATGATGTAAATACCAACCCTGAGAATAAACCAATAAATACAAACATAATACAAAGTATTCCTCTATATGCAAATAGATTGAGATTGGTATATTTTTCGTACTTTTCAGTGACTGCTGTAATTTTATTAGGCTTCAAAATGAAGTTTACACAGAGGAGTTAGAATTGTTTTATTACTGCAAGTTAAAATCAGGAGCTGGTTGGGCTTCTGTAGAAGTCCAACAATAGTCTTATCTCTTATTCCTGTTCATTGAACCATTCCCCATcttatatttatgtattcataTTGTACAGAAATGCAGAGCTCATTGAAGTTAAAGGTCCCAAGATTCCCTGACTGTTATAAAATCTAAGTAGTTCTGGACAAGAAAGCTTTGGAAAGATCAGGAACTCATGGAGCTACATTTCCTCACCGACTCAGAAGCTGCAGAAAAGATGAACCCACTGGTAATTGAACTGAATAAGTTGACGTGTGACTTTATTACCATCCATACactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66135 lncRNA downstream 77556 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 103208 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 131788 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 142278 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 152846 13355117 ~ 13357805 (-) True LOC120558463
TU66283 lncRNA upstream 135972 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 135972 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 227860 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 520176 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 599422 14118981 ~ 14125759 (-) True smim29
XM_039800979.1 mRNA downstream 62887 13445243 ~ 13447764 (-) True LOC120559332
XM_039800978.1 mRNA downstream 66705 13437589 ~ 13443946 (-) True LOC120559331
XM_039799470.1 mRNA downstream 75145 13414941 ~ 13435506 (-) False nfascb
XM_039800755.1 mRNA upstream 925 13520484 ~ 13527197 (-) False LOC120559206
XM_039800756.1 mRNA upstream 925 13520484 ~ 13527197 (-) True LOC120559206
XM_039800754.1 mRNA upstream 12320 13531879 ~ 13534915 (-) False lmod3
XM_039800753.1 mRNA upstream 12320 13531879 ~ 13534914 (-) True lmod3
XM_039801772.1 mRNA upstream 15842 13535401 ~ 13559677 (-) True LOC120559773
TU66001 other downstream 257179 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1071926 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1118980 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1287649 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1341442 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 620821 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1012565 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1325779 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1325779 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2761485 16281044 ~ 16283856 (-) True G50217

Expression Profile