RNA id: XM_039801921.1


Basic Information

Item Value
RNA id XM_039801921.1
length 3166
RNA type mRNA
GC content 0.45
exon number 18
gene id cdh26.1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15727200 ~ 15738542 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTGACAGATCACATGACTGCATGAATGAACAAGCCCTTTGTTAATTGAAGTCAGTCAACCTGCTGCCTGCAGGCATTGTGGGCTGTCGTCTGTGCGCTCGTATACAAGCTACCTTTGACTTTTGGAGTACTCCCACAGAGGATATCACGCAGAGTGGACCAGGATGAAGAACATTTTCCTGCTTCTGTTGGTTGCATTAACAGCCCTCGCGGAGTCTCAACAAGGCTACAACATCAGACGTGACAAGCGGGAGTTTTTGGTGCGTTCCAAAAGAAGGTGGGTTTTGTCTACGATTGAAATAGTAGAGGAAGATGAAGGGCCATTCCCCAAAAACATTACAGAGATGTATAATGACAAGACGGATCAGGAGGGGCAAATCTACCGTATCGCTGTAACGAATGCGGCCGGTAACCCCATTGATGGATTTTTCTCCATTGATGGAAATACCGGAGTCGTCTCTGTCCATAAACGTATTGACCGAGAGGAAATCGATCTCTTCAAAATCACGTTTGACATCTTAAGCAAAACGACTCTTAGAGAAATAGACAAAAGACTAGCTTTTGATGTACAAGTAAAGGACATCAATGACAACGCCCCGGCATTTATCGACCTTCCTTTGAAGGTGGATGTGAAGGAAAATACGGAAGAAGGGTACTTGCCAGTGCAGCTGAAGGTCATGGACAGAGATCAGCCGAACACACCTAACTCTATGTTCACCATCAGAGTGGTTAAACAGACCCCAGCAGAGCCCAAGATTGATTTGGAGCGAATGAATGACGGAATGGCCCAGCTCACCTTTACAGGATGTTTTGACTACGATaAAGTACAGAAGTATGAAGTTACTGTTGAAGCAAAAGATCAAGGAAACCCGTCCCGTTCCTCTACTGCTGTTATTACTCTCAATGTTGTTGACTCAAACAGTCATCCACCAACATTCAAGGAGAAAAAGTACCAAGGTGAGGTGTTAGAATCAACCATCAAGGACGATATTTTGAGAATTGCGGTAGACGACAAAGACACTCCTAAAACTCCTGGCTGGCGTGCCAAATACTACTTCATTGATGGGAATAAGGAAGAAAACTACAAAATTGAAACTGACCCCACAACTAATGAGGGTATTCTGAGTGTCATCAAGGGCAAGGATTATGAGACGACAACTAAAACAATCCTGCGGATTGGTGTAGAGAATGAGGAACCTTTATTTGTTTGTAAATCTAAATCAACTGGTCCCGCCGCCCCACCTCCAGATACAGTAAACATCACAATGAAAGTGATAGATGACAATGACCCACCTTACTATGAGAAAGATCATGTTGATGTGCAgcagaaagaagaggaggagccaGGAAAGGTGCTGTTCACTCCAATAGTGAAAGATGTTGACTCAGACGAATCCAAAATCAGGCATATGATAATAAAAGATCCAGCTGGCTGGGTGACCATTGATGAGAAAACAGGAAAACTCACAACAATTAAGAAGATGGACAGAGAGTCACCCTTTGTTGATGACAAAGGCATTTACAAAATCATCGTCGGTGCTAAAGATAATGGTGAGCCTCCATGCACGGGTACATGCACTGTCCTGGTCCACCTCAGGGATATCAATGACAACGTGCCCAAGCTGGTCAATAAAGGGGTCATTATGTGTGGAAACAAGGGCAACATGGTCATGGTGTCTGCCAACGACACAGACGCCGATCCTTTCAGTGGACCCTTCGCCTTCTCCTTGGGGAGTGACGACAAAACTCTGACGCAGCGATGGAAACTAGACCCTGCCTTTGGTAAGGAAGGTGGGCTTGTTAGCCTGAAGACGCTTGCTTATGGTAACTACTCAGTGCCCCTGGTGATTCAAGACCAACAGAACTCGATTGGACGTGATACTTTGAACGTGATAGTGTGTGACTGCGGAGAGGGAGATGTTTGTCGTAGCAAAGTGCCGTCCTCATCCAGCCTTGGGCCAGCGGGCATTGGACTGCTCCTTCTAGGACTCCTATTATTTTTGTTACTGCTCCTCCTCTTTATGTGTCAGTGTGGAGATAGGGAGGAGCCCATGACCATGGTGGAGGATGAGGGCAACCAGACCCTCATCAAGTACAACCAAGAAGCAGGGGGCTCTGAATGCAAGGCTGTGCCCACTCTGCTCCTGACACCTAGAAACAGTGTGGCTGTGACAGACGGCCTAAAAAATGGCACCATGCAGTACTCTACATGGACTACAAACATGTCGAAAACCTACCAGGGAGGCTCATCAAGATACAACCGCTCTCTCAGCCTGAAGTCAAATCACCAGATCACAGATCACATCACCAGGGGAGGCTCATCAAGATACCACCGCTCTCTCAGCCTGATGTCAAATCACCAGATCACAGATCACATCACCAGGAGATTGCACACGATTGATGGAAAACATGTGGACCACCCTGTGTACCTACCCTACGAGTATGCCTACGAGGGACAGGGCAGCCAATGCCAGTCTCTGGATAGCCTGTCGCTCAGCAACCTGGGAGATGATTTGATGTTTCTAAATAATTTGGGGCCAAAGTTCAAGACCTTGGGAGGCATCTGTCACCAGACACTTCAAGGAAAAAACATACAGCTCTAAAAGGCACCACTGGACTGGGATTTTCATATCAAGCAAATTGCTCTTCGGTCCGAGTTTGAGATTTTAATTTTGGACTGATCTGACTGGATCTTTGAAGAAAAGATATATGACAATGGTTGGATTACATCtcacatattcatatattgtaTATTGGCATCCCCACGGAACAAGGATTTTTAGCTTTTGAGGTTTGATGTTTATACGACGAGTTTGCTTGCTTGAAGATAGGGGCACTGCACAAACTGTCTCTGGTGCTCTGGTGATTTTGAAATGTTACGTTTGACAGTGACTGGGTGTGTTTTTTACTTTGCTGCCACGTCGCAGTTGTATCTTTTACAAAAGGACCGGCAGAAATTTGACTGGTTAATATCATTGTAGTTCAACAATATTGGGACAATGGTATTGTTCCTACTAAACAGAGCTGTGGCCTGCTGTTTATGATTTGGTGATACAGCGTTGAGGTATTGACACTGTCTTGCAACAGTACATAGTTCCTTTATTGCTTTGTTTTCTTGTGTGCATTTTTGAATCAAAACATTGAAATGCAGTATTTGAAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66923 lncRNA downstream 38773 15685011 ~ 15688427 (-) True G50104
TU66918 lncRNA downstream 62092 15664770 ~ 15665108 (-) True G50101
TU66805 lncRNA downstream 405279 15321709 ~ 15321921 (-) True G50006
TU66804 lncRNA downstream 407355 15319406 ~ 15319845 (-) True G50005
TU66803 lncRNA downstream 424563 15302398 ~ 15302637 (-) True G50004
TU66970 lncRNA upstream 140793 15879334 ~ 15896000 (-) True G50136
TU66972 lncRNA upstream 148349 15886890 ~ 15890117 (-) True G50138
TU66991 lncRNA upstream 191580 15930121 ~ 15933298 (-) True G50153
TU66980 lncRNA upstream 213989 15952530 ~ 15956672 (-) True G50143
TU67119 lncRNA upstream 547780 16286321 ~ 16379623 (-) False G50230
XM_039801284.1 mRNA downstream 3020 15715619 ~ 15724180 (-) True LOC120559538
XM_039799839.1 mRNA downstream 45485 15667178 ~ 15681715 (-) False LOC120558694
XM_039799838.1 mRNA downstream 45486 15667178 ~ 15681714 (-) True LOC120558694
XM_039800895.1 mRNA downstream 625300 15095189 ~ 15101900 (-) True ogfr
XM_039800887.1 mRNA downstream 635776 15076829 ~ 15091424 (-) False col9a3
XM_039801935.1 mRNA upstream 2675 15741216 ~ 15757208 (-) False LOC120559871
XM_039801934.1 mRNA upstream 2675 15741216 ~ 15757208 (-) True LOC120559871
XM_039801223.1 mRNA upstream 53637 15792178 ~ 15798489 (-) False irf10
XM_039801222.1 mRNA upstream 53637 15792178 ~ 15798489 (-) True irf10
XM_039801848.1 mRNA upstream 61399 15799940 ~ 15823806 (-) True bmp7b
TU66613 other downstream 873383 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 873383 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1192595 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 1581978 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 2473728 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 542503 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 1949574 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2101003 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 3141824 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3961232 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile