RNA id: XM_039801957.1


Basic Information

Item Value
RNA id XM_039801957.1
length 1582
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC120559881
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13307588 ~ 13328250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATCAGTCACAGTAGACAGTGTATGATTCTTTCACCATTATCTTTTGGCGACATGTGCAAACTCACTCTAACTGCAGGTCTCTGTTTGATCATCGCCAGCTTGGCGTCATCCTCCAGGCTGGTGTGTTACTATAACAGCTTGGCTGAAGAGAGAGCAGCATACGGGAAGGTCACAGTTTCCGATATCGATCCAAACCAGTGTACTCATCTGATCTACGCCTTTTCTGACATCAACAACAATGAGCTGGTCAACAGCACTGCAAGTAGCATAGACTATCAGTCCTTTAACAGACTCAAAACCAGAAATCCACAACTCAAAACCCTGTTGGCAGTGGGTGGCTTGACCTTCAACATACAAAAATTCAGTACAATGGTGGCAgaacaacaaaacagaacaaGATTCATCCAGTCTGCGATCACACTACTAAGAGAATATGGGTTTGATGGGCTAAACCTTGACTGGAGGTACCCCGGAGGACCTGGAAGCCAACCACAGGACAAGCAGAGATTCACACAGCTGTGCACTGAGCTCAAAGAGGCCTTTGTGGAAGAGGGAACAGCATCTAACCGTGACAGATTAATCATCACTGCTAGTGTCTCTGCGGAGAGAGCAACCATCGATGCCAGTTATGAAGTTGCACAGATTGCCACGCAGCTGGATTTCATCAATGTGCTGACATTTGACTTCCATGGCCCCTGGGAAAATGTCACAGGACATCACAGCCCCTTATACCAGGGATCCAAAGACACTGGAAACGAATCCTACTTTAACACTGACTTTGCCATGCGCTACTGGCGGGACCAGGGAGCACCTACACAAAAGCTAAACTTGGGGTTAGCGGCATACGGGCGAGCTTTTGACCTCTCCACTAATTCCAGTGATGTTGGAGCACCAGCCAATGGTCCTGGTGAAGAAGGCTGCTACACTGGTGAAGAAGGATTCTGGTCCACTTATGAGACTTGTCTTTATATTGAAGGGGTTCCAACCAATCTGATTCCTGATCAGAAAGTTCCATATGCCACCACAGACAATCAGTGGGTTGGATTTGACAACATAGATAGCCTTGATACTAAGGTCAGTTACCTAAAAACTAACAACTTTGGAGGAGCTTTTGTCTGGTCTCTGGACTTGGATGACACTAGTGGTCAATTCTGTAAAATTGGCAACAATCCCTTCATCAGCCACCTGCATACTCTCCTGGTTCCAGTGTGACATCATCCTGGGGATCAGGGCGGCGTCAGCAGTGATGGACTGCTGTGGCAAAGAGAGAGCTGAGCTGGAAGGAAAAGCTCTTGATTTACTAGTCGATCTATGTTCAGACCCTCAACTAGCTGAGTTTTGGGCATGGACCACAACTACAAAAACTCTACTTAcctaccacaactacaactccccctacCACAACTACAATAACTCCCCCTACCACAGCTACCACACATCCAGGTTCTGGAAACCCTTAATTAGTAAGGTCAATGGGTACTACACCAAACCTGCAGACCCAACAAGTTTTTACCAATGTGATGGTGACAGAGCCTTCGTTATTTGCTGTAACTTTCCAAGTAAATAAAGAGTTGCACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66015 lncRNA downstream 23338 13281987 ~ 13284250 (-) True G49447
TU65973 lncRNA downstream 86346 13206367 ~ 13221242 (-) False camta1a
TU65959 lncRNA downstream 383260 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 468456 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 528268 12775917 ~ 12779320 (-) True G49374
XR_005639127.1 lncRNA upstream 26867 13355117 ~ 13357805 (-) True LOC120558463
XR_005639126.1 lncRNA upstream 38013 13366263 ~ 13368373 (-) True LOC120558462
XR_005639128.1 lncRNA upstream 48377 13376627 ~ 13378863 (-) True LOC120558464
TU66102 lncRNA upstream 78601 13406851 ~ 13407443 (-) False LOC120558461
TU66135 lncRNA upstream 104269 13432519 ~ 13433095 (-) True G49514
XM_039801959.1 mRNA downstream 7596 13292514 ~ 13299992 (-) True LOC120559884
XM_039801960.1 mRNA downstream 11195 13292514 ~ 13296393 (-) False LOC120559884
XM_039801961.1 mRNA downstream 11828 13292514 ~ 13295760 (-) False LOC120559884
XM_039799635.1 mRNA downstream 44790 13259325 ~ 13262798 (-) True mfsd4ab
XM_039799634.1 mRNA downstream 53980 13250986 ~ 13253608 (-) True LOC120558587
XM_039801265.1 mRNA upstream 11243 13339493 ~ 13343953 (-) True LOC120559526
XM_039799476.1 mRNA upstream 67766 13396016 ~ 13406184 (-) False LOC120558460
XM_039799475.1 mRNA upstream 68453 13396703 ~ 13406184 (-) True LOC120558460
XM_039799477.1 mRNA upstream 68453 13396703 ~ 13406115 (-) False LOC120558460
XM_039799478.1 mRNA upstream 78535 13406785 ~ 13413178 (-) True LOC120558461
TU66001 other downstream 54116 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 868863 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 915917 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1084586 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1138379 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 812130 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1203874 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1517088 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1517088 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2952794 16281044 ~ 16283856 (-) True G50217

Expression Profile