RNA id: XM_039801961.1


Basic Information

Item Value
RNA id XM_039801961.1
length 1509
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120559884
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13292514 ~ 13299992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGTGGATCTCAAAACCCTTCTGGCAGTTGGTGGTTCGACTTTTGGCACCCAAAAGTGAGATATATTCACCACAATGGTATCAACAACAGCAAACATGAACAAATTTATCCAGTCATCTATCACACTACTGAGAAATGAGGGGTTTGATGGATTAAACCTGAACTGGGAATTTCCTGGACAAGGAGGAAGTCCTCAACAGGATAAACAGAGATTCACACTGTTGTGCCAGGAACTCCTAAAAGCTTTTGAGTCTGAGGGAACAGCAACTGGCCGCCCCAGATTATTGGTCACTGCTGCTGTGTCTGCTGTCAAAGGATCCATCGATGCAAGTTATGAAGTCGCAGAGATTGCCAAgTACCTGGATTTCATCAATGTGATGACATATGACCTTCATGGCACCTGGGACGGGGTCACAGGACATCACAGTCCCTTATACCAAAGCTCCCAAGACACTGGAAGTCAAACATACTTAAATACTGACTATGCAATGCGGTATTGGCGAGACCAGGGGGTTCCTGCTGAAAAACTAATTTTGGGATTTGCTGCATATGGGCGAACATTTACCCTGTCCTCTACATCCAGTAACGTTGGAGCACCGATCAGTGGTGCTGGCTATGCAGGCAGTTACACCATGGAGGCAGGCTTCTGGTCCTATTATGAAGTTTGTCTTAATCTTAACGGAAAAACAGTCAATTGGATTGAAGAACAGAAAGTTCCATATGGCACCACAGGAAACCAATGGGTTGGATTTGACAACATAGACAGCATTAATGCTAAGGTCAACTACATAAAGGCAAACAACTTTGGAGGAGTCTTTGTCTGGTCTCTGGACCTGGATGATTTCAATGGGCAGTTCTGTGATCAGGGCAAATACCCCCTCATCAGCTATCTGCATAGTCTTCTGGTTTCAGGAGTTCCAGTTATGACCACTGTTAAGAATCCTTCAGCCATAACTACTACCACCAGAGCCACCACCACAACCGCAACCACCAGCGCCACCACCACAACCAGCGCCATCACCAGAgccgccaccaccaccagcaccgCAACCACCAGCGCCACCACCAGAgccgccaccaccaccagcaccgCAACCACCAGCGCCACCACCACAACCAGCGCCGCCACCACCAGAGCCGCCACCACCAGAGCCGCCACCACAACCAGAGCCGCCACCACCACAAACTCTGCTGGGAAATTTGATCCAAATTTCTGTAAAGGAAAGACCAACGGGCTTCACACCAACCCTTATGACTCAAACTCGTTTTACAATTGTTTCAATGACTTTACCTATCTCCAAAACTGCCCCTCTGGTTTAATATACCAAGATAACTGCAAATGCTGTAACTGGCCCTAAATGAGCGTGCATAATCCATGATGGGTagtatatacttatatactactatacttaTTACAAAAGCTGGTGTGAGTCATTCCTTTTTATTCTTCACTGCTAAGAAAGCTTTGTCTTCTATGCTTGCTTTTAGGCCATTGTTAAGCTCTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66015 lncRNA downstream 8264 13281987 ~ 13284250 (-) True G49447
TU65973 lncRNA downstream 71272 13206367 ~ 13221242 (-) False camta1a
TU65959 lncRNA downstream 368186 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 453382 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 513194 12775917 ~ 12779320 (-) True G49374
TU66052 lncRNA upstream 12757 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 12757 13308517 ~ 13312729 (-) False LOC120558437
TU66061 lncRNA upstream 12757 13308517 ~ 13311160 (-) True LOC120558437
XR_005639127.1 lncRNA upstream 59357 13355117 ~ 13357805 (-) True LOC120558463
XR_005639126.1 lncRNA upstream 70503 13366263 ~ 13368373 (-) True LOC120558462
XM_039799635.1 mRNA downstream 29716 13259325 ~ 13262798 (-) True mfsd4ab
XM_039799634.1 mRNA downstream 38906 13250986 ~ 13253608 (-) True LOC120558587
XM_039799629.1 mRNA downstream 42952 13244763 ~ 13249562 (-) False LOC120558584
XM_039801957.1 mRNA upstream 11828 13307588 ~ 13328250 (-) False LOC120559881
XM_039799445.1 mRNA upstream 12600 13308360 ~ 13309625 (-) False LOC120558437
XM_039801956.1 mRNA upstream 18345 13314105 ~ 13328250 (-) True LOC120559881
XM_039801265.1 mRNA upstream 43733 13339493 ~ 13343953 (-) True LOC120559526
XM_039799476.1 mRNA upstream 100256 13396016 ~ 13406184 (-) False LOC120558460
TU66001 other downstream 39042 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 853789 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 900843 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1069512 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1123305 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 844620 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1236364 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1549578 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1549578 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2985284 16281044 ~ 16283856 (-) True G50217

Expression Profile