RNA id: XR_005639096.1


Basic Information

Item Value
RNA id XR_005639096.1
length 2983
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC120558360
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8743335 ~ 8746512 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acatacatatacatacatatatacatacatacatacagacacatatacatacatacatacagctcAACTCAAAGAGGAGAAGACGCAGAGTCTATCTCTTATTTTCTAATTGTTGACTTTTCTTACAAACAAATGGCTACTGATCACTAACGGTCATCTCAGGATAGAGATGGAGAAGACTAGAAATCTGCTGCAAGGATTTTTTGTGCCAATGAAAGTCCCTTTTGTACTCTCTTCTACTGTGTAAACGTGTATTTTACTACTCTACTTTTCTTACAATGAAGTTTGAGTTGTGTAAGCAGTTCTTCTTCTTAAAGGATAATCCACTGTTTTTTGGGATCCCGCGCCTGTGTACTGTACCAACCGGCTCACCAGAGAGAGGTTTCAAGGTGCCGATTTGTTTTCAAGCATTCAAATTAAAATCAGGGGAATCTTCTTGTCTCCTTTCAGTTCTAACCTTCATTAATATGCAGATTTCTATCTTGAATCAACCTCAGTATGTCCGTAATTAGTGCATCTTTGTGCACAATCGTACACTGGAGATATTCCGTTTTCTGTGCTGCTTAAATGAGCAACAGAGCGACCCTGTGCTGTGCTTCCTTCAGCCTGCAGGAGGCAGACCAGAACGCCAATCCCATATGCATACATCATGCATAGCAAATCAATTGGCATCTTGAAACGTAATTGTAAATATCCTTATTGTATATATATCACCTTTTATAATTTATTCCTTTTAAAATAACCCAATTGTTTAGTTTGCCCATTGTTCAAACGTTAACGTTTATGGTACTTTTATGGGTTGAATAACCTCTGACAATATCGATATATGTTATAGAGACGCTTTCACATTACAAGTATGTTGTTTCTGTGCAcgtatttttgtacattttcagTATGACTTGAATTGGTGTGGAGAACTGCTCCCTATCCCCTGACTGACAACAGTTGTGATCATCTAGCAGCATTACTCCTTCCCATAATAcaatcaaaaccacaaatgtttACATTGTGATAATCTTCTatctagtcattttggtgctgcttcagaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcaatggTTTGTCATTGACGTCTCCAGCTTGTTCATGAAGCACTACTCATTATGATTACATAACTCCATACAGAAGAGGGGTGTGAGTGCCACCACGTTTGATCTCCGTGTAACATCCACTGTGTCCTGTGGACACAGGTTATGTCACAATTAATGCATTTAACCTGCATGGGTGTAGTCGGGCTGTCTGGCATTGTCCCCTTCTTTGTCTCATTGGATCCTCATGAGCAAAAAGTGCACGAAAAAGATCATATTGGATGCAGCCTTGCTCACAAGCCAAGGACATTTCCTTTTGGGTTCTGTGGGTCTTCTTGCTAtgcagatatttttttaaatctgtgatattcctatatatatatatactcttttTCTACTGTATCCAATGGGGATTTTCAGATACATAGCTCTTTGTTAAATCCTACTGAATCTTGTTCAAATTTGAAAGTACGAACGTTTGAATAAAATTTGTATATTTCAGACCGTATCCTATGGTGTTTGAATCAATTTGGTCTCCATAATCAGGAAGAGCTGACTGAGTTTGTATTTGAAGTGAATCCGAAGTCTGTGATCAAAGGTCATAACCAATAATTGACCTGCTTTTTACTTTCAGTTGTCAGTTGCCTCAGAAAAGGTGAAAGTGATCGTGAATATTGTGAACTAAATCCACAATTTGTTGAAAGTGGCCTTGCTATTATTACAGCATAACTTCATTCAAGTAGGAatactatgttttttgttttttaaatgcagaaagTCAATGTGTTTATAGTGATATGAACATCGGAAAGAAATCCATGAAAaaattttagtcatttttaaattttgtttttcttcatcaaCTGTGTAGTATTGAGACACTGCCCATGATTGTGTCCACAGCTCATAGAACATTCTTATCTTACCTACATTACATGAAATATTGTATTTATATGTAATCATGTTTGCAAATCCTATTGTAACACAGTGCTGGAAGTACTCAACTACTAAAATGTACGACTACTCATGATGCAGACACTTGTCTGTGTTATATTATTACGTTATATGAattgattattattactgatgcattaacGTGTTAACAGCTTTTACATGTTGGAACTGGTCGAGGTGGAGCTAATTTCAACTACTTTGTATAATTGGGGTAGTTTAATCGGTAGGCTTTTCGTtcgttttctgtttttctctgatTACAtggttttgtatgtaaaatctcCATTTGCAGAGTAAACACTAAGCATAGCTGTCAcataaagtaaaaagtacaatatttgcctctgaaatgtgGAGTAGGAGTACAAAGTAGCTATCATAAAACGGGAATAGTCAGGTAATGTACAAGGACCTCAAAACTGTTTTAATCCTATTGCTGTTTGGGTTTCATCTTTACCTCAGGACTTTTCCCATGAGAATTGCTTATAGATATGATTTTGAGCTGATGAAATGTTTCGGAAGTCGGATACAATAAATTACGCATTAGTTTAGTTTGGGGTCTCGGAGACCCCAGCTGTTAAACATGGTTGAATACAATGGGTTTTCGTATTGAtagtgttattattgttattgtttatttccaAGTAGGTTTACATATACAAGAAATTCGCTTTGGTGCATAGGTGCATAGACAAGAAACATCATTAtagaatagaagaaaaaaaaatacaatataaatgttaaaaatgtataaaatgaaaatatgtacagtaaatatagGCAGGAATGTGCCAGGATATATTCCAAGGGATGTGCAAAGGTTCACAGTAATtaacaataaaaagaatatgCGATGTA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64295 lncRNA downstream 35370 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 38624 8704391 ~ 8704711 (-) False LOC120559289
TU64266 lncRNA downstream 89016 8611698 ~ 8654319 (-) False G48128
TU64267 lncRNA downstream 89016 8611698 ~ 8654319 (-) True G48128
TU64146 lncRNA downstream 361234 8381117 ~ 8382101 (-) False ada
TU64434 lncRNA upstream 330563 9077075 ~ 9088743 (-) True G48255
TU64476 lncRNA upstream 464412 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 535784 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 538405 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 632488 9379000 ~ 9386915 (-) True LOC120558858
XM_039799324.1 mRNA downstream 307 8716760 ~ 8743028 (-) False mical1
XM_039799323.1 mRNA downstream 307 8716760 ~ 8743028 (-) False mical1
XM_039799322.1 mRNA downstream 329 8716760 ~ 8743006 (-) False mical1
XM_039799320.1 mRNA downstream 329 8716760 ~ 8743006 (-) False mical1
XM_039799321.1 mRNA downstream 329 8716760 ~ 8743006 (-) True mical1
XM_039799326.1 mRNA upstream 455 8746967 ~ 8788376 (-) False src
XM_039799328.1 mRNA upstream 455 8746967 ~ 8788375 (-) False src
XM_039799327.1 mRNA upstream 455 8746967 ~ 8788375 (-) False src
XM_039799325.1 mRNA upstream 455 8746967 ~ 8788375 (-) True src
XM_039800982.1 mRNA upstream 46022 8792534 ~ 8841006 (-) True kcng1
TU64005 other downstream 555784 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 637140 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 856485 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1244533 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1256275 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 944018 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 961819 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1278482 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1896207 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3142429 11888941 ~ 11891046 (-) False srxn1

Expression Profile