RNA id: XR_005639241.1


Basic Information

Item Value
RNA id XR_005639241.1
length 2239
lncRNA type intronic
GC content 0.38
exon number 4
gene id LOC120559366
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40507697 ~ 40510459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGATGCAGGAGCCTGGACACGGAGAGGCCTGTTCCACTCAAAGCAACACACAACCCAACACGGCTGTTGGAGGAGGTGGGTCGTGTACACTCCACAGCGAGCATTGGCTTCACTGATGGCTTTAACCAGATAGTTCCCAGTGTTTGCCCTGGCTCAAGGAAAATCTCCACTAGCTAAACAGTACTTGGAGGCCAGAGAAGAAGCACTCACCGAGAATCTACAAGGAATGGACTTCAGAGATCCTCCTGtcaatcatttttaaaatgagtgTGGATCATCACATCATGATTGGAGAGGGTGAACCCAACACACCATTCCCAATTGTCCAGGTGACCCAAGAAGACTGGAAGTCCACATTTGGGGGACGTAGCTGTTGTTCCCTGAAGGTAGACGGGGTCGAGGTGTGTGAAGGCATGAAGGTAGAGGAAGCAACGATCTCATcgttttattcttattttgtttttgatcTTGAATACCAACCCAAAAACAAGAACACTCTGATTCATCCAGCGATGTATTGTGAAAATGAATGTGAAGGGAGTGTATTTCACTTTGAAAAAAGGAATTCTCTCACCATGCAACAcatccacaacaaaaacatcttGTGTGGCATACTTGACATTGTTAACGGTTACTTCTGAAACATGTATAACTTTATCTTCACTTAAAGAAACATCAGTGAAATATTGCTCTAGAGCACACTGGAGAGTAAGTGGTAAGGAACAAAATGGAGTGCTAGTACTGCTTCTTGGTACCTTCTCAAAATCCTCTAAATTATTTGAAGAAAAGTCCCAGCATTGTTTTAACTGGTGACGGTTGCTCAGAGTGGAAGCTATATTAATGAAATTACGACAATTACTTGCAATATTCTTAAAAATTTGGTGTTTGCTTCAAACTTCATGCACCAGTGAGAATGAAGAGGCCCAAACATTGACCTTAATCTTCAATAATGAATTAAATAATGGCATTTTGGTGTAATAAAATTTCCAAATACAGCTTTTCAACTCTGTCAAAAATTCTTGCACAAGTACATCTAAAAGAGATTCTCGCTTCACACCGTTGGAGCTAGAACAATATCTACAATTTCTCGGCACAACAGGTATACACGCCAATATTGGCACAATGGAATACGATGTGCGATCAAAAAAGGAATAAGTCTAAAAATGCACTATTTCTGAGATGCCGAGCCCGCAATGCCTCCTTATTATAGTAGTCTTTGAGACCACCGTGCTGGCTTATTTGCTCTATCATTTTGACCTATTCTCATTCTCAGTAGCTTTTCTCTTGTAtgctaatattttttttatgcacaTGGCACAGGACAAGTTTCAAAACTAAAGGTATGACACCCTCTATCATGTCATGCATTATGTCTGGAGATAAGGACTTAGTAACATCTACACTGTACCCCATATGTTACTCTACTGTCAGGATCTAACCTCAATTTACAGTATTCTTTCAATTTGAACTGAGAAGAGAACTCTCTTGATGcttcctcaaaaaaaaaatcattggacTGTAAATCTTGAAGTTCAGGACCTCCTTCGACATCAAAACAATtttctttaatataaaatataaattcatatttctccttttttttttttttttaaacaagcaaAATAGAAAGTTTACATCACTAAGTATTTCTTGCTGAACAGATTCTAGTAAATTGTGTTCTCCCTGTATTTTAGGATGAAGCTACAaagattatttttaaaggcaTCATGGGCATGAGTAAGTCCCACATGTTGGACCAACTTCATGAGAGTTAAAGTTTTTCTTTGGCACTTGGGTCACTGTTATACACAAGGATGTAAACAAGGCATTTAGAAATTAAGATTTAGTAGATGAGGTTTATTGATCTGGGTACAGTCGTCGgcagatgtttttgttgtggatgTGTTGCATGGTGAGAgaattcctcttttttttttcagaatgaaatacatttttaatgtggaCACTACATGGGTTCTTTGTGGAAAACTGATATTTCCAAAGTATTTTAGCCAGCACGCAGATGAGGTACCTGGAGATCTGTCTTTGTGGCAATGAAATACAGTGTTTAAGACTGTTTAAAAATTACACCTTCAGATTGTACAAATATTTTAGCACTGGTGTGTATCGACTAATCTTTAGATGTTGTATCTTTCTTTATAACTTTGGTCATTAAAGTGTATTGCAAATGAAGATTGTGGTGTGTGGGAGTTATTCACTTTCTAGTATTTGAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76291 lncRNA upstream 19577 40386328 ~ 40488120 (+) False G56847
TU76313 lncRNA upstream 116482 40390374 ~ 40391215 (+) True G56862
TU76303 lncRNA upstream 128417 40293712 ~ 40379280 (+) True G56853
TU76309 lncRNA upstream 136896 40370183 ~ 40370801 (+) True G56858
TU76239 lncRNA upstream 222319 40284770 ~ 40285378 (+) False G56827
TU76294 lncRNA downstream 12312 40522771 ~ 40524538 (+) True G56848
TU76296 lncRNA downstream 12312 40522771 ~ 40524538 (+) False G56848
TU76340 lncRNA downstream 31916 40542375 ~ 40560935 (+) True G56881
TU76339 lncRNA downstream 50032 40560491 ~ 40562636 (+) False G56881
TU76345 lncRNA downstream 98105 40608564 ~ 40612303 (+) False G56886
XM_039801429.1 mRNA upstream 38133 40469283 ~ 40469564 (+) True LOC120559596
XM_039801778.1 mRNA upstream 42771 40464551 ~ 40464926 (+) True LOC120559775
XM_039801763.1 mRNA upstream 56283 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA upstream 56283 40430117 ~ 40451414 (+) False hm13
XM_039799941.1 mRNA upstream 321541 40160010 ~ 40186156 (+) True ptpn18
XM_039801037.1 mRNA downstream 162572 40673031 ~ 40691622 (+) True LOC120559371
XM_039801039.1 mRNA downstream 194859 40705318 ~ 40710077 (+) True LOC120559372
XM_039800491.1 mRNA downstream 212193 40722652 ~ 40725794 (+) True LOC120559071
XM_039799518.1 mRNA downstream 225458 40735917 ~ 40744474 (+) True LOC120558500
XM_039799615.1 mRNA downstream 377951 40888410 ~ 40889879 (+) True LOC120558575
TU76286 other upstream 50522 40456109 ~ 40457175 (+) True G56847
TU76217 other upstream 359077 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 396409 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 490382 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 589334 39808857 ~ 39918363 (+) True G56127
TU76475 other downstream 590135 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 610816 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 1961461 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 2867887 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 3007491 43517950 ~ 43518074 (+) True LOC120559932

Expression Profile