RNA id: XR_005639266.1


Basic Information

Item Value
RNA id XR_005639266.1
length 1586
lncRNA type intronic
GC content 0.40
exon number 3
gene id LOC120559426
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3121212 ~ 3129853 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taatgcatcatttacatatttaaacAGACATTTCAGAGAActttgaatagaaaaaaaatgtcttaatgTCTGTAATCAGCTGGGGAAGTTTGATGGTGTTGAAcagctgctgtgtgttttaGAAACCAGcaggtgtctctgtgtctgagctTCATACGGCTTCAGACATCACTAACGGCAACATGTGAAGACAGAAAGCAGTCACTTTAATTCCAATTATCAAAGTGTTGTCAATCTGTCGTTTCTCAATATGCAACCACACAACCCTATAGCAGAAAACACCGTCaaaatcccccccaaaaaacatttGCCGATCAATCAATTGATCAAGTTACTATTCCATCATTTccttaataaaataatttggtCATGTATTCATTCTGTTACTGATATTTTAATTAGATATCTGATTCTAGCAGCGTTACAGCtgtaacattatttatttaaacacagAAGAGCTTAAATGTCGTTTAAGTGTAAGGTATTTTAATGTGTTACCTCTCAGCTGAAGGTTAACCCTCCTTCTGTTTTGTCTGTAAAGTATAAATGATCACCCcattctgtgttacatcttcttagcAAACATCATTCCAACCTATTACCACTAGTGTtacacttatttctggaattcatggtcaataaacctcattaaTATTAACTTATACCTACTttctgagtttaaaaaaagcacaaattatgaattattttgactaacaaTTAAAATCAGAGGATGtggagtggatcacagactggtatatgtcaGCGTTTTAGTCAGGAAacttttgaaaccatttcaatttCTTTACAAATGCTATAAAGTTGAATAAAACCCCCACAATTCAATGAGAGTAGTGAGCCActccttcattttacttgcaaaatgcgttgtatggaaccatccatgttatttttgaggCAATTTGGTTTTAAGTAACCTATATTTCTGAtacagaaactttgaaaacgggtcaaatttgacccgaggacaacaggagggttaagaggaagttacagtaaaccatagagcttttattgtgacgGGAAAAGCGGAAGTGGATAAAATGTTTTAACTGTGTTGTGGTTGAATGAAGAGAGCCGTGCAGTGCCGTCTTGTTTCCGGCATTGGACGCccgtgtttctttattttatagtcAAACCTGAGTCTAGGCAACAGAAGAAACTCGCGGTTGCATTAGTAAACAAACGTCTGCCCGGAGGTTGTTGGTACGACCCGTAATACCGTCCGTCCCCGGAACTAACGTTAACTGTTTATGTGTCACATCGGTATGAATACGGCGGAGTAAAACGCGCTAGTGTTTAGAAAGAAACGTCCCAAGCTTCTGGATGtggttttaaaagctgaaacaaagctacacagagcagGTCGCAGAGCCGCGAGGAACTTTAAAATGAAGTCTGAGAGGAAGCTGTCAGCGGACCAGGGGACAGCTTTACCTCAAGATGTTCTGGAAGTGATTGTTGgtgaagaggagcagcaggagtgtagcgccagtgtggaccagcaggagccagagccccccccacacattaaagaggaacaggaggaactgtggagcagtcaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62649 lncRNA downstream 49812 3070176 ~ 3071400 (-) True G46803
XR_005639269.1 lncRNA downstream 61758 3056573 ~ 3059454 (-) True LOC120559428
TU62637 lncRNA downstream 434658 2686125 ~ 2686554 (-) True G46798
TU62629 lncRNA downstream 459740 2660739 ~ 2661472 (-) False LOC120559433
XR_005639274.1 lncRNA downstream 459746 2660731 ~ 2661466 (-) False LOC120559433
TU62705 lncRNA upstream 31075 3157691 ~ 3158572 (-) True G46856
XR_005639268.1 lncRNA upstream 320593 3447209 ~ 3450188 (-) True LOC120559427
TU62770 lncRNA upstream 365170 3491786 ~ 3492760 (-) False LOC120559401
TU62664 lncRNA upstream 390087 3516703 ~ 3517741 (-) True G46816
TU62775 lncRNA upstream 391821 3518437 ~ 3518669 (-) True G46920
XM_039801075.1 mRNA downstream 53997 3059497 ~ 3067215 (-) True LOC120559388
XM_039801076.1 mRNA downstream 54982 3059497 ~ 3066230 (-) False LOC120559388
XM_039799571.1 mRNA downstream 317934 2765018 ~ 2803278 (-) True LOC120558535
XM_039799570.1 mRNA downstream 356336 2762276 ~ 2764876 (-) True LOC120558533
XM_039801099.1 mRNA downstream 360057 2757509 ~ 2761155 (-) True LOC120559403
XM_039801083.1 mRNA upstream 46740 3173356 ~ 3177853 (-) True LOC120559391
XM_039801084.1 mRNA upstream 46740 3173356 ~ 3177009 (-) False LOC120559391
XM_039801085.1 mRNA upstream 46932 3173548 ~ 3177854 (-) False LOC120559391
XM_039801090.1 mRNA upstream 58662 3185278 ~ 3192170 (-) True LOC120559395
XM_039801096.1 mRNA upstream 125266 3251882 ~ 3253051 (-) True LOC120559400
unassigned_transcript_223 other downstream 176288 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 176885 2944256 ~ 2944327 (-) True trnaq-cug_2
TU62526 other downstream 773708 2346505 ~ 2347504 (-) True G46698
XR_005639247.1 other downstream 785511 2334724 ~ 2335701 (-) False LOC120559407
XR_005639248.1 other downstream 789969 2329654 ~ 2331243 (-) True LOC120559407
TU62665 other upstream 156425 3283041 ~ 3285923 (-) True G46817
TU62955 other upstream 828410 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 828988 3955604 ~ 3956382 (-) True G47059
TU63179 other upstream 1603885 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 1606180 4732796 ~ 4733285 (-) True G47254

Expression Profile