RNA id: TU81251


Basic Information

Item Value
RNA id TU81251
length 467
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G60566
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10686683 ~ 10704693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAACACAACCATGACCCATTTCCAGAAAGGCACTGTGGTTGCCTGCATGATCTACAGGAGCTTGACAGTAGATGAACTCCTCTGGTCTTCATCATACATCACAAATAGCTGCAGAGGACCACTGGTGACGGAGGTTTGTACTCAAAGGGCTCTGTATAATTCGCACTTTCCACCGGTATTTCATATGTAGCTCCCTGACCAGGAGAAACAGCAGGATAATCAGTTGTCGATGAGTTTTGGGAGTGAATTCCTCCCAGGCATTGTAAAAGAATCACCGTCAGTAGCATCAGGAACTGACCGCACAACAGAATATAGCTTACTGAGACCATTGTCACTCTCAAAATACTACAttaattctaataaaatagccaTTCATGGTTAACGGCCACTTTTAAGCCAGCTAACGTTACCAAGGAATGTTTGATTGAGTCGCGTGTGTATGACGCTATCTAAacccttcttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81216 lncRNA upstream 117797 10568306 ~ 10568886 (+) True G60533
TU81152 lncRNA upstream 319959 10354292 ~ 10366724 (+) True G60479
TU81148 lncRNA upstream 323823 10342427 ~ 10362860 (+) True G60475
TU81146 lncRNA upstream 344303 10342099 ~ 10342380 (+) True G60474
TU81124 lncRNA upstream 596569 10073298 ~ 10090114 (+) True G60453
TU81259 lncRNA downstream 31028 10735721 ~ 10736180 (+) True G60574
TU81260 lncRNA downstream 37959 10742652 ~ 10742886 (+) True G60575
TU81262 lncRNA downstream 65853 10770546 ~ 10770824 (+) True G60577
TU81296 lncRNA downstream 108086 10812779 ~ 10814069 (+) False G60607
TU81298 lncRNA downstream 108086 10812779 ~ 10852906 (+) True G60607
XM_039803877.1 mRNA upstream 705629 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA upstream 705629 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA upstream 705629 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA upstream 716778 9927049 ~ 9969905 (+) False LOC120560959
XM_039803070.1 mRNA upstream 1310937 9368199 ~ 9375746 (+) True LOC120560494
XM_039804112.1 mRNA downstream 21745 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA downstream 21746 10726439 ~ 10746953 (+) False LOC120561142
XM_039804113.1 mRNA downstream 43424 10748117 ~ 10752440 (+) False LOC120561144
XM_039802043.1 mRNA downstream 468326 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 468381 11173074 ~ 11188211 (+) False marveld2b
XR_005639542.1 other upstream 705629 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other upstream 705629 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other upstream 705694 9927107 ~ 9980989 (+) False LOC120560959
TU81099 other upstream 733444 9926950 ~ 9953239 (+) False LOC120560959
unassigned_transcript_251 other upstream 1473370 9213242 ~ 9213313 (+) True trnaq-cug_4
XR_005639562.1 other downstream 21753 10726446 ~ 10746948 (+) False LOC120561142
XR_005639564.1 other downstream 43423 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other downstream 43423 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other downstream 43423 10748116 ~ 10752440 (+) False LOC120561144
TU81647 other downstream 1221490 11926183 ~ 11926601 (+) True G60897

Expression Profile