RNA id: TU82213


Basic Information

Item Value
RNA id TU82213
length 1460
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC120560400
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14252256 ~ 14281771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTAGAATAATGTAGTTGTAAAGTTCTTGCCCCCACACTAGTCTCTCAttaccagacctatctccacagtggcCTGGCTACACAGCTGATCCGGTACATCCGTGTAGCCAGACTACCCACACACTGATATGATTCCAGGCCGGACCCTTGGAAGCCTTATTTGAGTTTTGCGAACATGTTttctgttaaatatgaagccatCTCAAGCCTTCTCGGTAGCGTAAGGGGACGTTTTGTTCACAGGAGTAAACTGAGAGGTGAACATAATGTTTGTAGACCTTGTGCCATAATCCTAATGGTGTCAACCCAGTGTTACAAACCGACAATAGCATACAGGCTGTAGACTGAAGGGACTGCATGTCATATATTAAGGTTGTGTATGATTCCCTGTTGCCAATTTCTCTttataattatatttacagttgtGAATTAGCTTCACGCCAGACTGCCACAAACTACCAATGCTCAAACTAAAGCTGACTAATGCCATACAATTTAGGTTACGCTCACAGGAAGTTTTGTTGGAGTGAGTGAGCCGTTGAAGTATTTTTCATAACACACAGTATTCTGCCCTCTGCGTAgtgttgatacatttttttttttaaactgtctaACCACTGGATGCCAGCAATACGTTATTGAAAAGGTCACATCACCTACCTCTTATCTTCTGTGGGTTTGATGTTCCGAAGCAAAAGCTAGAGTTCCTACGCGTTTTCCATCTCACGACGGTTTGAGGTCGAGGAAAGTATTTAATGTAATGGCAGCTCAGCAGGCCATAGCTCAATCCACAAAGTCTCAGCATGTGGCAGGACAGTGGATCTGCTGTTACGAGCTGCGTTATCACGTGTCAGGTcagttttctttacttttttgtgaaaatgatttaaCTTCCAAATCTTTTATGGGACTGCAGCAATCCTGTGGTCTGCAAATCTTGCCAAAAAGGACTGGAATCCACTGGAGTTTTAATTGGTTTTTCTGTGTGTCAGCAGTAGGTGTATGAATTGGTGTGAGTGCACTGTTCTAGCCTTATCCCTCATACTGTGCCAGGGGAATGTTCagatcttttctttttaatcttGTGTTCAGCTGTAGCCTGTTTCACCAAACTGTAACTAAGTCACACTGTGACTACAAATGGCAGCTTGTATGAGCCCTCATCAGGGTTGGATTTATTCTGTAACCTCTATTCCATAATACCATCTTCCACAGGCCAACATTTGAAAGGtggattttacattttttttttttttcccctttctttctttgtccaaATGTACACACTTTGTTGGTGGGCGAATCCTATATTACAAAAGGCTGCCTGACCTGTACATGTCTTGAACTCTTGCAACAGCAACACAGAAACAATGTCTATAAAAATGTATGTCATGTTTAGAAAAATATGTAAAAGAATGGTAATGGAGTCCGAGAAATCCCACAAAACAAGTCGACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82212 lncRNA upstream 17263 14262155 ~ 14262869 (+) True G61376
TU82211 lncRNA upstream 26789 14252256 ~ 14253343 (+) False LOC120560400
TU82166 lncRNA upstream 218961 14060922 ~ 14061171 (+) True G61332
XR_005639583.1 lncRNA upstream 374792 13904693 ~ 13905340 (+) True LOC120561318
XR_005639581.1 lncRNA upstream 375474 13903363 ~ 13904658 (+) True LOC120561317
TU82225 lncRNA downstream 43734 14325390 ~ 14327533 (+) True G61389
TU82228 lncRNA downstream 46524 14328180 ~ 14329747 (+) True G61391
TU82286 lncRNA downstream 83576 14365232 ~ 14368488 (+) True G61431
TU82318 lncRNA downstream 119575 14401231 ~ 14401881 (+) True G61448
TU82319 lncRNA downstream 120399 14402055 ~ 14402762 (+) True G61449
XM_039803875.1 mRNA upstream 33827 14234278 ~ 14246305 (+) True idua
XM_039803370.1 mRNA upstream 46744 14212284 ~ 14233388 (+) True LOC120560659
XM_039803371.1 mRNA upstream 47883 14212239 ~ 14232249 (+) False LOC120560659
XM_039802180.1 mRNA upstream 68430 14198758 ~ 14211702 (+) True LOC120560074
XM_039802776.1 mRNA downstream 95598 14377254 ~ 14383227 (+) True unc119.1
XM_039802551.1 mRNA downstream 107815 14389471 ~ 14392583 (+) False c6h12orf43
XM_039802552.1 mRNA downstream 107908 14389564 ~ 14392583 (+) False c6h12orf43
XM_039802550.1 mRNA downstream 123484 14405140 ~ 14429432 (+) False msi1b
XM_039802549.1 mRNA downstream 123488 14405144 ~ 14429432 (+) False msi1b
TU82172 other upstream 138082 14141442 ~ 14142050 (+) True G61338
TU82171 other upstream 170586 14107483 ~ 14109546 (+) True G61337
TU81938 other upstream 1356296 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 1356296 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 2353531 11926183 ~ 11926601 (+) True G60897
TU82219 other downstream 1761 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 35883 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 35883 14317539 ~ 14319506 (+) False G61390
TU82315 other downstream 107947 14389603 ~ 14392578 (+) True c6h12orf43
TU82322 other downstream 149674 14431330 ~ 14434597 (+) True LOC120560925

Expression Profile