RNA id: TU82226


Basic Information

Item Value
RNA id TU82226
length 956
RNA type TUCP
GC content 0.51
exon number 6
gene id G61390
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14317539 ~ 14319506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGAAGTCTGGTAAAGAACTTAGGCAGAGGGTGAAACAGGTAAAACACACAACTAAGTCAAATGTAAGCCATAAGgatttattagtttgcttcaAAGAATGTCACTACTGCAGCAGCTGCAATAGATATCAAAATGCAGTATGGTGTAATGGAAGGACAAAGGGGTTGGTGCTGGAAGGGAGCAAGGCGTGGCGAGGTCAGGGTTCATGACAGGAAAGAGTCACAAGCTTAGTTGACGGGGTGAAAAGTACCCCTCTGATGCCACTGCATGTCTCTGATGCGCCGAACCGACTGGATCTGAGGAATCTGGGCTCCGAACTCAGTGCTGTCCTTATACTCCCCCTTTTCAAACAGGTACTGATAGCCTCTGTAGCCTGGATACTGATAGCCCACCCACGTGCCACTCTGAACCCGAACAGAGGAGACCTTCTCCTGGTAGCCGTGCGCATGAAAGCTGGGGACATCGTCATCTATGATTTCTATCTTCTTCCCCGCGAAGCTGGGGTTTTCGTAAAGGACAATCTTGTGCTCCTGGCTGTCCACTTTAATCGGGCGGAATGCAACAATGGTGTCACTACGCCTGCTGTTGGTCCAGGAATCCCAGCGAGGATACTCCCCCTTCTCAAACACATACTGCTCCCCCTTACAGTTGTTCTGCTCGTATCCCACCCATGGTCCACACAGCACCAGTATGGAGCCCACTTTCTCCACGCCTGCTTCCTGGAGGTTGTTGCAGGGACCAGTCAGCTCATGGCAGCGTCCCTGGAAGTTTTCCTGCTCATAGATAACCAGCTTAAATGCACTGGtgcctggctgctgctgcttggaTGCAGGTTTCAGGTGGTCTGTGGCCATAGTGAATGGATCGGCAAAGATGAAACAGTACCTGTCTGTGCCAGTGTGTTTGTGATGGCACGATCAGCCCAATATATACGGGACGCCCAGGGGTGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82213 lncRNA upstream 35883 14280132 ~ 14281656 (+) False LOC120560400
TU82212 lncRNA upstream 54670 14262155 ~ 14262869 (+) True G61376
TU82211 lncRNA upstream 64196 14252256 ~ 14253343 (+) False LOC120560400
TU82166 lncRNA upstream 256368 14060922 ~ 14061171 (+) True G61332
XR_005639583.1 lncRNA upstream 412199 13904693 ~ 13905340 (+) True LOC120561318
TU82225 lncRNA downstream 5884 14325390 ~ 14327533 (+) True G61389
TU82228 lncRNA downstream 8674 14328180 ~ 14329747 (+) True G61391
TU82286 lncRNA downstream 45726 14365232 ~ 14368488 (+) True G61431
TU82318 lncRNA downstream 81725 14401231 ~ 14401881 (+) True G61448
TU82319 lncRNA downstream 82549 14402055 ~ 14402762 (+) True G61449
XM_039802864.1 mRNA upstream 35768 14265347 ~ 14281771 (+) False LOC120560400
XM_039802863.1 mRNA upstream 35769 14252911 ~ 14281770 (+) True LOC120560400
XM_039803875.1 mRNA upstream 71234 14234278 ~ 14246305 (+) True idua
XM_039803370.1 mRNA upstream 84151 14212284 ~ 14233388 (+) True LOC120560659
XM_039803371.1 mRNA upstream 85290 14212239 ~ 14232249 (+) False LOC120560659
XM_039802776.1 mRNA downstream 57748 14377254 ~ 14383227 (+) True unc119.1
XM_039802551.1 mRNA downstream 69965 14389471 ~ 14392583 (+) False c6h12orf43
XM_039802552.1 mRNA downstream 70058 14389564 ~ 14392583 (+) False c6h12orf43
XM_039802550.1 mRNA downstream 85634 14405140 ~ 14429432 (+) False msi1b
XM_039802549.1 mRNA downstream 85638 14405144 ~ 14429432 (+) False msi1b
TU82219 other upstream 33668 14283417 ~ 14283871 (+) True G61383
TU82172 other upstream 175489 14141442 ~ 14142050 (+) True G61338
TU82171 other upstream 207993 14107483 ~ 14109546 (+) True G61337
TU81938 other upstream 1393703 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 1393703 12921147 ~ 12923836 (+) True G61139
TU82315 other downstream 70097 14389603 ~ 14392578 (+) True c6h12orf43
TU82322 other downstream 111824 14431330 ~ 14434597 (+) True LOC120560925
TU82404 other downstream 436019 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 436019 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 455007 14774513 ~ 14786109 (+) False surf4l

Expression Profile