RNA id: TU82286


Basic Information

Item Value
RNA id TU82286
length 2081
lncRNA type inter_gene
GC content 0.43
exon number 7
gene id G61431
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14365232 ~ 14368488 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAATTGTTTATTCATTTCCATTCTTACACTTGCTCAAAATGTTAAGGTGAATTAAAGAAccctaaacaaaacaaatttccaaTCCACTTCAGGTTTCAAAGCCTTCTTTAAATGTCAGCAATTCTCTAATTTCACACATTTTCAACACTGAAATTAATCTGTGGGAGTAATGTTAAAAGTTAGTAAACCTTTTACAACAGAAGATGACAGGAGAAATGAGAAGAAAAGTGCGTACTTATGGTTTAATCACGCAGAATACACTGGAGTTCTGTTGAACCAGAAGACCTAATCTCTTTAATACAATACTGTGTTTTCACTTCCTCATAATGATATTATATGTATTCATGTTGTTACAAAATACCATGGCATTGATATCTATCCTAAAAATCTATCCTCTTGAAAAGGCTGATCAAGCTCAAACTAGCCCAAATGTGATAAAACACTGAAGTGTATTGGTCTCCATCTATTCTAAGCTGAAATCACACATTGATGTCTGAGTGCTGAGCATCAtggaaaagatttaaaaaaggtgCAACTTACCTGCAGCTGGCTGACTGCAACTCTAATATAAAGCACCCAGAGTTATCTTATCAATATTACTCAGGGATCCTAGATGCTCAGGTTCAACTTCAGGAAAGTTGGACATCATACAGCAAACCACTGTGATACAAGTCAGGTATCTGGAAGCCATGAAAAGCCTAAAGCATACATAATGAGAGCCCCACAGGTTGTTATATCCCTTGCTTTACTTCTCAATTAAAATGTTACCAATATGGCTTTCAGTGTGACTTCAGGAGGTGGCTGCAAAGCGTCGACCTAGTtgtacaacaaaaaatgtatgtacatTTAATGTAAATTAAACAGATGGCATGTCAACCAAAAATGGATCAAGCCCATAGAACTATGACTAAAGCGGCATGAACTATGGCTACAtactaaaaccttttttttttcccccatagCTTATAGATCTAAGAAAGATCTGCATGGAAGTAAAAACACAAGCAGTGGGAAGATCAACTCAAAGAAACTGAATATGAATAAATGAACTTCAGTGTTGTCTACTTGGTGTGAACCATGGATGTGCTGAACAgaagtttttgctttttcttcttcttctttcctcctttctcATCTGGGTCAACCACAGGTTGCGGAGGAGCAGCAGCTGCGCCATTGTCCAGCTGCAGAAGTGCCTTCTCAAAGGCCTGGCTGAAGGAGTTCTGGAAGCTGGGCACGGGGACGCGGTCCGACCCGTCGCTCTCTCCATCGCTGTCAGCTGCTGGGGGAGCTAGCAGTTGATCTTTCTTTGGAGGGATCCTGGGCCCAGCATCACCTCTGGCCTTCCCATCTCTTAGCATCTGTGCAAAGGACATACAATGGGAGTCATCCTCCACACTACCCACAATGGGTGAAGAGCTTTGCCCATTCAGACTTGGGAATCTCATCCCATCTAAAACAACAAAAGGAATGCTTAACTGACAATGCCTTGATTAAGCATTTGAACGCCTAAATATAATCCATAAACAGCCAGAGATTCAATGTATAGCACTGAACCATAATTCGCTGAGGAAGGCGCTGCTCTTACCAGAGGAAGGACTGCAGCTGAGGGGTGAAGAGGGAGCAAATGTGAAGTCGGGCTGCACTGGGAGGCTGCTGTTGTGAGGAGGAGACCCGAATGCTGGGAAATGCTGAAGGTTCTCCAACCCAATATGCACCTCAGGATATTTACCCTGCTTCTTGTTCTCTTCAATTTCAATTCGCTTCTCTCTGCGCTTCTCATCCCTTACTTTCTTCTGCCTCAGGCGCTTTCTCTTCTCCAAGTCATCTGCAAATGTGTCCAGAGTTTCTTTGGACAGGATTGGCGGCTGTAGGGCTAACTCACAGATGCTGAACTCGCACGTGAGTGGCAGGTGAGCCAGATAGCGATGCCGACGACGGATCTCCTCAGTGACTGTGTGTCCCACTATCTCCACCACTGTGGCAGTGATGGAGTCCGGACTGGCCTCCAGGCTGCCGTATTCACGCAACAGACAGCGTACATTCACAGGATGCAGGAACATCTGCTGGCAGTCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82228 lncRNA upstream 35485 14328180 ~ 14329747 (+) True G61391
TU82225 lncRNA upstream 37699 14325390 ~ 14327533 (+) True G61389
TU82213 lncRNA upstream 83576 14280132 ~ 14281656 (+) False LOC120560400
TU82212 lncRNA upstream 102363 14262155 ~ 14262869 (+) True G61376
TU82211 lncRNA upstream 111889 14252256 ~ 14253343 (+) False LOC120560400
TU82318 lncRNA downstream 32743 14401231 ~ 14401881 (+) True G61448
TU82319 lncRNA downstream 33567 14402055 ~ 14402762 (+) True G61449
TU82320 lncRNA downstream 35145 14403633 ~ 14404172 (+) True G61450
XR_005639561.1 lncRNA downstream 96515 14465003 ~ 14465725 (+) True LOC120561034
XR_005639559.1 lncRNA downstream 100709 14469197 ~ 14472189 (+) True LOC120561032
XM_039802864.1 mRNA upstream 83461 14265347 ~ 14281771 (+) False LOC120560400
XM_039802863.1 mRNA upstream 83462 14252911 ~ 14281770 (+) True LOC120560400
XM_039803875.1 mRNA upstream 118927 14234278 ~ 14246305 (+) True idua
XM_039803370.1 mRNA upstream 131844 14212284 ~ 14233388 (+) True LOC120560659
XM_039803371.1 mRNA upstream 132983 14212239 ~ 14232249 (+) False LOC120560659
XM_039802776.1 mRNA downstream 8766 14377254 ~ 14383227 (+) True unc119.1
XM_039802551.1 mRNA downstream 20983 14389471 ~ 14392583 (+) False c6h12orf43
XM_039802552.1 mRNA downstream 21076 14389564 ~ 14392583 (+) False c6h12orf43
XM_039802550.1 mRNA downstream 36652 14405140 ~ 14429432 (+) False msi1b
XM_039802549.1 mRNA downstream 36656 14405144 ~ 14429432 (+) False msi1b
TU82226 other upstream 45726 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 45726 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 81361 14283417 ~ 14283871 (+) True G61383
TU82172 other upstream 223182 14141442 ~ 14142050 (+) True G61338
TU82171 other upstream 255686 14107483 ~ 14109546 (+) True G61337
TU82315 other downstream 21115 14389603 ~ 14392578 (+) True c6h12orf43
TU82322 other downstream 62842 14431330 ~ 14434597 (+) True LOC120560925
TU82404 other downstream 387037 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 387037 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 406025 14774513 ~ 14786109 (+) False surf4l

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018558 True 3409 mRNA 0.58 17 CM030135.1 14361036 ~ 14367961 (+)