RNA id: XM_039802552.1


Basic Information

Item Value
RNA id XM_039802552.1
length 1055
RNA type mRNA
GC content 0.46
exon number 6
gene id c6h12orf43
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14389471 ~ 14392583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGAATCCTCAGCTCAAAACAGACATCACCAGCGGCACATGCATTAATCATGGCGGCCGCCGCTAAAAACATGGTTGCTGTTGACGATTCCAGCAGTAGTGACGATGAAGCGCTTAAAAGATGTCAGGAGGCAGTTTGGGACATACGAAGTGACAAGAACAAAGATGAGGACAGCAATGTGCAACAGTCAAAGCGtgttgttgtcgcTGACCATGACCACGATGGCAACGAGCTTCAGGTCACCAAAGGGTTTCAAATACACGTTGCTAAGAAGTTGGGACATCTGCTTGACAGTTCcattacagagatggagactgAAACTTTATCCTGTGTGAAATCAGCTAAATGTGGtggtgatgataatgatgatgatgatgaagGATTCCGTCTGTTTTCTACGTCAGTCCCGGGACAGAAAGCTGATGATCCTCCGGCCCCTGTGAGGCGTCGGCCCGTACCCAGCTCAAGTGACAGCGACAGTGAGATGGAAACACGGCTGAGGGAGGCAGCGGTGTCTGTCAAAGATCTCTTACACACATCGTCACTGCCCTCTACTCTCTCCACTCCCTCGACAGAGCTTCCCTGCtctgaaaaagtaaagaaaaagacgAAAGcggcagagggagaggagaaccatgttaagaagaaaaaaaagaggaaaccgaCTCATGAAGAGAGTGAGCAGGTGGACTCTGCAGGTTCTCCTCTTAATGCTCAAAGAAATGGTGAGCCCAGGACCTCAGAGCAGGAACACACGCAGGTCAAAGTGAaacggaaaaagaaaaagaagcgaGAATTACACCCAGAGGAAGAAGCTTTGAACTGAATTTCCTCTTGACTAATCTTTCACTGTTTCGGGGATGTTTGTTTGTTATCCAGTCTGCCATAGTTCGTTACAAGCTTGTAATATATTTCCCGAAAACGTTTTGAGTATATTTTTAGGAAGCCACATGTTTCAGAGCATGCGGCAAATACACAACAGTAAATGCATCTAAAATGTGTAaacaaaacccccccccccctttttttttcattaaaaatctTTTCATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82286 lncRNA upstream 21076 14365232 ~ 14368488 (+) True G61431
TU82228 lncRNA upstream 59817 14328180 ~ 14329747 (+) True G61391
TU82225 lncRNA upstream 62031 14325390 ~ 14327533 (+) True G61389
TU82213 lncRNA upstream 107908 14280132 ~ 14281656 (+) False LOC120560400
TU82212 lncRNA upstream 126695 14262155 ~ 14262869 (+) True G61376
TU82318 lncRNA downstream 8648 14401231 ~ 14401881 (+) True G61448
TU82319 lncRNA downstream 9472 14402055 ~ 14402762 (+) True G61449
TU82320 lncRNA downstream 11050 14403633 ~ 14404172 (+) True G61450
XR_005639561.1 lncRNA downstream 72420 14465003 ~ 14465725 (+) True LOC120561034
XR_005639559.1 lncRNA downstream 76614 14469197 ~ 14472189 (+) True LOC120561032
XM_039802776.1 mRNA upstream 6337 14377254 ~ 14383227 (+) True unc119.1
XM_039802864.1 mRNA upstream 107793 14265347 ~ 14281771 (+) False LOC120560400
XM_039802863.1 mRNA upstream 107794 14252911 ~ 14281770 (+) True LOC120560400
XM_039803875.1 mRNA upstream 143259 14234278 ~ 14246305 (+) True idua
XM_039803370.1 mRNA upstream 156176 14212284 ~ 14233388 (+) True LOC120560659
XM_039802550.1 mRNA downstream 12557 14405140 ~ 14429432 (+) False msi1b
XM_039802549.1 mRNA downstream 12561 14405144 ~ 14429432 (+) False msi1b
XM_039802548.1 mRNA downstream 12562 14405145 ~ 14429432 (+) True msi1b
XM_039803816.1 mRNA downstream 38805 14431388 ~ 14433300 (+) False LOC120560925
XM_039804211.1 mRNA downstream 45242 14437825 ~ 14445152 (+) False prkab1b
TU82226 other upstream 70058 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 70058 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 105693 14283417 ~ 14283871 (+) True G61383
TU82172 other upstream 247514 14141442 ~ 14142050 (+) True G61338
TU82171 other upstream 280018 14107483 ~ 14109546 (+) True G61337
TU82322 other downstream 38747 14431330 ~ 14434597 (+) True LOC120560925
TU82404 other downstream 362942 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 362942 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 381930 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 381931 14774514 ~ 14786109 (+) False surf4l

Expression Profile