RNA id: TU82318


Basic Information

Item Value
RNA id TU82318
length 651
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G61448
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14401231 ~ 14401881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAACTGCTAGCTAACAACTCAAAGACATCTGAGATGTGACAAGAGGCCCCAGCTAGACGCTGCGTTTTTTTTACAaggggtcacaagccaaaaaaaaaGGTCGGGAACCACTAGTTTGATATTTAACAATGTATTATATTTCATAAGCATTTCATACACTAAATTTAACACTAAAATTGTCACCTGCAAGGTAACTAGTAACCAGCAGTCAAGTGAATGTAGTAGagataaaagtgtttttttaaagtataaagtagaatAAAATGGTTACAAGTTACAAGTACGAGTACATCAAAATTGCACTCGactacagtacttgagtaaatgtactcagttatattccaccactggtaacATGTATGTTTACATATGACATCATATACATTTCTATGGTTTACTATTCTCACTTTGTATATAAatcttttgtactttttcattttccttGTCAAGCACTTTGTAATCTCTGGTTTTGATAGGGGCCACATAAATAAGCGACTGTTATCACCACTATGGTATTATTTTACGGTCCATCTGCTCACCTGTTGACATTTCAACTTTCTGATGTCTAAATAAGTCACAAGACACAGTCTTAATGTCACCGAATGCAaacataaatgtacattttgtgcAGTTGATGTTGGTTATTGTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82286 lncRNA upstream 32743 14365232 ~ 14368488 (+) True G61431
TU82228 lncRNA upstream 71484 14328180 ~ 14329747 (+) True G61391
TU82225 lncRNA upstream 73698 14325390 ~ 14327533 (+) True G61389
TU82213 lncRNA upstream 119575 14280132 ~ 14281656 (+) False LOC120560400
TU82212 lncRNA upstream 138362 14262155 ~ 14262869 (+) True G61376
TU82319 lncRNA downstream 174 14402055 ~ 14402762 (+) True G61449
TU82320 lncRNA downstream 1752 14403633 ~ 14404172 (+) True G61450
XR_005639561.1 lncRNA downstream 63122 14465003 ~ 14465725 (+) True LOC120561034
XR_005639559.1 lncRNA downstream 67316 14469197 ~ 14472189 (+) True LOC120561032
TU82334 lncRNA downstream 67332 14469213 ~ 14472101 (+) False LOC120561032
XM_039802551.1 mRNA upstream 8648 14389471 ~ 14392583 (+) False c6h12orf43
XM_039802552.1 mRNA upstream 8648 14389564 ~ 14392583 (+) False c6h12orf43
XM_039802776.1 mRNA upstream 18004 14377254 ~ 14383227 (+) True unc119.1
XM_039802864.1 mRNA upstream 119460 14265347 ~ 14281771 (+) False LOC120560400
XM_039802863.1 mRNA upstream 119461 14252911 ~ 14281770 (+) True LOC120560400
XM_039802550.1 mRNA downstream 3259 14405140 ~ 14429432 (+) False msi1b
XM_039802549.1 mRNA downstream 3263 14405144 ~ 14429432 (+) False msi1b
XM_039802548.1 mRNA downstream 3264 14405145 ~ 14429432 (+) True msi1b
XM_039803816.1 mRNA downstream 29507 14431388 ~ 14433300 (+) False LOC120560925
XM_039804211.1 mRNA downstream 35944 14437825 ~ 14445152 (+) False prkab1b
TU82315 other upstream 8653 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 81725 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 81725 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 117360 14283417 ~ 14283871 (+) True G61383
TU82172 other upstream 259181 14141442 ~ 14142050 (+) True G61338
TU82322 other downstream 29449 14431330 ~ 14434597 (+) True LOC120560925
TU82404 other downstream 353644 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 353644 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 372632 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 372633 14774514 ~ 14786109 (+) False surf4l

Expression Profile