RNA id: TU82320


Basic Information

Item Value
RNA id TU82320
length 540
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G61450
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14403633 ~ 14404172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGATGACAAATACAACAAAGTAATTATTATGTAACAAACCATAAGTTGCCATTCAAGCACCTCAGACACATTATAGGAGCCTGTGAGTATATTAAAGGAGCAGTATGACTTCATGTTTACCTAATATTATTCAAGTCTGCTACATTGATAAGTAATTTCTCAGCCAACTGTTGGCTGATTCACTTTGTGGCTTCACTTTTCCATTAACACTGTAAGGACAACACAAAATGTACAGAGCAGACTACAACACGGcctgttgtgagtaaaagtcgtgtctgtaatatatttttactaaattGAATTAATAGCACATGATATTAATTTCCTGGCAATACAAATACCACTTTCATTCACATGTGGTTTGTCATAATATGTCATAGATTTTTGCAAGACTTTCACTGtaattttacctttttttcaaAGACCTTTCAAAACGGATTATATTACAAATGAACATTAGTTCTCGTAACTGTAAATTGTGCCTGTTAACACTGTATCCAAACTAGAACGGGAATTGCCTCAAATGAATCGAAGTTA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82319 lncRNA upstream 871 14402055 ~ 14402762 (+) True G61449
TU82318 lncRNA upstream 1752 14401231 ~ 14401881 (+) True G61448
TU82286 lncRNA upstream 35145 14365232 ~ 14368488 (+) True G61431
TU82228 lncRNA upstream 73886 14328180 ~ 14329747 (+) True G61391
TU82225 lncRNA upstream 76100 14325390 ~ 14327533 (+) True G61389
XR_005639561.1 lncRNA downstream 60831 14465003 ~ 14465725 (+) True LOC120561034
XR_005639559.1 lncRNA downstream 65025 14469197 ~ 14472189 (+) True LOC120561032
TU82334 lncRNA downstream 65041 14469213 ~ 14472101 (+) False LOC120561032
XR_005639539.1 lncRNA downstream 93609 14497781 ~ 14499057 (+) True LOC120560938
XR_005639538.1 lncRNA downstream 93626 14497798 ~ 14499057 (+) False LOC120560938
XM_039802551.1 mRNA upstream 11050 14389471 ~ 14392583 (+) False c6h12orf43
XM_039802552.1 mRNA upstream 11050 14389564 ~ 14392583 (+) False c6h12orf43
XM_039802776.1 mRNA upstream 20406 14377254 ~ 14383227 (+) True unc119.1
XM_039802864.1 mRNA upstream 121862 14265347 ~ 14281771 (+) False LOC120560400
XM_039802863.1 mRNA upstream 121863 14252911 ~ 14281770 (+) True LOC120560400
XM_039802550.1 mRNA downstream 968 14405140 ~ 14429432 (+) False msi1b
XM_039802549.1 mRNA downstream 972 14405144 ~ 14429432 (+) False msi1b
XM_039802548.1 mRNA downstream 973 14405145 ~ 14429432 (+) True msi1b
XM_039803816.1 mRNA downstream 27216 14431388 ~ 14433300 (+) False LOC120560925
XM_039804211.1 mRNA downstream 33653 14437825 ~ 14445152 (+) False prkab1b
TU82315 other upstream 11055 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 84127 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 84127 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 119762 14283417 ~ 14283871 (+) True G61383
TU82172 other upstream 261583 14141442 ~ 14142050 (+) True G61338
TU82322 other downstream 27158 14431330 ~ 14434597 (+) True LOC120560925
TU82404 other downstream 351353 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 351353 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 370341 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 370342 14774514 ~ 14786109 (+) False surf4l

Expression Profile