RNA id: XR_005639559.1


Basic Information

Item Value
RNA id XR_005639559.1
length 1147
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120561032
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14469197 ~ 14472189 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcagagagacagagacgctAAGTGAACGGACTTTGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTCTGCTGTGTTTTGGCGTATTGGAATCGACAAGAGGAGACGGACATCTGTGAGTGTAAAAGAGAGAGGATCGGGGAAACTCCTTTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGCCTGCTGCCATCGCCAAGTTGGCCTTTTTCATATATCCCCTTGGCTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCAGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAATAAAAGAACCTCCTGAACCATTCCTGCTTAACTCACCTCCACTGGACCTTGCACATTTGTTTCCATCTCTACATCAAACATATTGAACGATACTCTAAAATGTATATAGAAATTGCTTACTTACTTTTCCTGGCACATTTAACTTGTACGTAATACATCTTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAGTACGCTGTTGCAGGAGAGGTAAATGACACCAAGATATGGCagttgaagaaaaacaaatgtagagTATGTGATAACAGGACATGCAAGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTATAGATTGATCACGCAAGTAAGGTTAACTAGCAAGTTGTTTGTTAAGGGCTGATGGCTGGTTAACATTACGGACAAAAACTATTTGTTCCGCGTATTCTCTTGTGTGTATCACGTATccgtctcctctagctgttgtGGTTGATATGACGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAGCAAAGCAATGTGATGTCACGTGGTCCTTATAAATATATACCAGAAACTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTGAATTTTTGatgttatttaataaatgtcatgttttatatctgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639561.1 lncRNA upstream 3472 14465003 ~ 14465725 (+) True LOC120561034
TU82320 lncRNA upstream 65025 14403633 ~ 14404172 (+) True G61450
TU82319 lncRNA upstream 66435 14402055 ~ 14402762 (+) True G61449
TU82318 lncRNA upstream 67316 14401231 ~ 14401881 (+) True G61448
TU82286 lncRNA upstream 100709 14365232 ~ 14368488 (+) True G61431
XR_005639539.1 lncRNA downstream 25592 14497781 ~ 14499057 (+) True LOC120560938
XR_005639538.1 lncRNA downstream 25609 14497798 ~ 14499057 (+) False LOC120560938
XR_005639540.1 lncRNA downstream 25649 14497838 ~ 14499057 (+) False LOC120560938
TU82340 lncRNA downstream 26991 14499180 ~ 14499434 (+) True G61468
TU82392 lncRNA downstream 203948 14676137 ~ 14677372 (+) True G61513
XM_039803999.1 mRNA upstream 14951 14450851 ~ 14454246 (+) True pla2g1b
XM_039804211.1 mRNA upstream 24045 14437825 ~ 14445152 (+) False prkab1b
XM_039804210.1 mRNA upstream 24045 14438024 ~ 14445152 (+) True prkab1b
XM_039803816.1 mRNA upstream 35897 14431388 ~ 14433300 (+) False LOC120560925
XM_039802548.1 mRNA upstream 39765 14405145 ~ 14429432 (+) True msi1b
XM_039803809.1 mRNA downstream 76490 14548679 ~ 14555480 (+) True cfap77
XM_039803808.1 mRNA downstream 76491 14548680 ~ 14555480 (+) False cfap77
XM_039803810.1 mRNA downstream 84200 14556389 ~ 14563699 (+) True barhl1a
XM_039803267.1 mRNA downstream 154432 14626621 ~ 14642212 (+) True LOC120560602
XM_039803269.1 mRNA downstream 154462 14626651 ~ 14642211 (+) False LOC120560602
TU82322 other upstream 34600 14431330 ~ 14434597 (+) True LOC120560925
TU82315 other upstream 76619 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 149691 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 149691 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 185326 14283417 ~ 14283871 (+) True G61383
TU82404 other downstream 283336 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 283336 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 302324 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 302325 14774514 ~ 14786109 (+) False surf4l
XR_005639552.1 other downstream 302354 14774543 ~ 14786109 (+) False surf4l

Expression Profile