RNA id: TU82392


Basic Information

Item Value
RNA id TU82392
length 585
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G61513
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14676137 ~ 14677372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTCTTCTCTCCCTGTCATCCCCTGCGTTGTTTCTTCCTGGGACCCAGCAGAAGTTTTTGAGGATGAACTTCATGATTTAGTTTTTAGTAGAGAGCTTAAGGAGGCAGCCTTACGTGTGGCTTGCCGGAAGGCTTCTTCTAACTGGAACAGGAACAGGCAACAAGAGCAGGAGTCTGCCGACTGGACACTGGGGACGGGGGCCAGAGGCGGGTAAGCCGGACCGGAGTCAGGAGACGGGTCAGCTGGGCCAGGGTCTGGCAGCAAGGCAACAGGAGCAGGATTCAGGGGTCGGTCCTGCTTGGCCGCCATAGGGATTCCGCCTTCGCTGCCGGCTGCCAGAGGGGTTATGCCAGAGGGGTTCTGCCAGAGGGGTTCTGCCGCTGCCCAAAGCCCCTGGTTCCCGAACCACACTGCCCTCAGTTCCCGCTTCCCTAACCACGCTGTCACCTGTTCCAGCGCACCCCTTCACCCTCCCTCCTCGGGGTCCCCTGCCCTCTCTGGTTGACTTTTGTTCTTCTTttgtgcctgcctgccttcctCAGGACACCTTATGTTGTAAatcttttgtttaataaaattcCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82340 lncRNA upstream 176703 14499180 ~ 14499434 (+) True G61468
XR_005639539.1 lncRNA upstream 177080 14497781 ~ 14499057 (+) True LOC120560938
XR_005639538.1 lncRNA upstream 177080 14497798 ~ 14499057 (+) False LOC120560938
XR_005639540.1 lncRNA upstream 177080 14497838 ~ 14499057 (+) False LOC120560938
XR_005639559.1 lncRNA upstream 203948 14469197 ~ 14472189 (+) True LOC120561032
TU82398 lncRNA downstream 22153 14699525 ~ 14754056 (+) True G61514
XR_005639594.1 lncRNA downstream 78078 14755450 ~ 14762495 (+) True LOC120561401
TU82458 lncRNA downstream 349069 15026441 ~ 15027400 (+) True G61539
TU82459 lncRNA downstream 350233 15027605 ~ 15027818 (+) True G61540
TU82698 lncRNA downstream 468728 15146100 ~ 15152551 (+) True G61730
XM_039804189.1 mRNA upstream 9872 14646727 ~ 14666265 (+) True LOC120561189
XM_039803267.1 mRNA upstream 33925 14626621 ~ 14642212 (+) True LOC120560602
XM_039803269.1 mRNA upstream 33926 14626651 ~ 14642211 (+) False LOC120560602
XM_039803810.1 mRNA upstream 112438 14556389 ~ 14563699 (+) True barhl1a
XM_039803809.1 mRNA upstream 120657 14548679 ~ 14555480 (+) True cfap77
XM_039802857.1 mRNA downstream 299 14677671 ~ 14753400 (+) True grin1b
XM_039802858.1 mRNA downstream 299 14677671 ~ 14753400 (+) False grin1b
XM_039802860.1 mRNA downstream 300 14677672 ~ 14753400 (+) False grin1b
XM_039802861.1 mRNA downstream 300 14677672 ~ 14753400 (+) False grin1b
XM_039804510.1 mRNA downstream 90344 14767716 ~ 14772152 (+) True kazald3
TU82322 other upstream 241540 14431330 ~ 14434597 (+) True LOC120560925
TU82315 other upstream 283559 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 356631 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 356631 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 392266 14283417 ~ 14283871 (+) True G61383
TU82404 other downstream 78153 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 78153 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 97141 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 97142 14774514 ~ 14786109 (+) False surf4l
XR_005639552.1 other downstream 97171 14774543 ~ 14786109 (+) False surf4l

Expression Profile