RNA id: TU82459


Basic Information

Item Value
RNA id TU82459
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G61540
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15027605 ~ 15027818 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagaaggccgcatgcactgtgtagattggctaaagataaaggtgggtaggcatagagcaggttgtttacatcGCACTGAATCAAGATCAGTTTTCTAAGAACgagttgagattgaaagagtggaattaatttgtaactgatccccggtcagattgggttgtatcagcgagtgaaagtgtggaaaagggagagaaagaagcggctgctataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82458 lncRNA upstream 205 15026441 ~ 15027400 (+) True G61539
XR_005639594.1 lncRNA upstream 265110 14755450 ~ 14762495 (+) True LOC120561401
TU82398 lncRNA upstream 273549 14699525 ~ 14754056 (+) True G61514
TU82392 lncRNA upstream 350233 14676137 ~ 14677372 (+) True G61513
TU82340 lncRNA upstream 528171 14499180 ~ 14499434 (+) True G61468
TU82698 lncRNA downstream 118282 15146100 ~ 15152551 (+) True G61730
TU82731 lncRNA downstream 195304 15223122 ~ 15224015 (+) False nudt18
TU82732 lncRNA downstream 196296 15224114 ~ 15224465 (+) True G61756
TU82730 lncRNA downstream 196729 15224547 ~ 15224969 (+) True G61754
TU82733 lncRNA downstream 212598 15240416 ~ 15241442 (+) True G61757
XM_039803152.1 mRNA upstream 45988 14979874 ~ 14981617 (+) True LOC120560530
XM_039803151.1 mRNA upstream 45988 14980789 ~ 14981617 (+) False LOC120560530
XM_039803123.1 mRNA upstream 47808 14928373 ~ 14979797 (+) True cntrl
XM_039802201.1 mRNA upstream 102668 14891572 ~ 14924937 (+) True c5
XM_039802199.1 mRNA upstream 141151 14878628 ~ 14886454 (+) True prdm12b
XM_039803124.1 mRNA downstream 191319 15219137 ~ 15223666 (+) True nudt18
XM_039803702.1 mRNA downstream 215032 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA downstream 215032 15242850 ~ 15252339 (+) False lrrc2
XM_039803705.1 mRNA downstream 254147 15281965 ~ 15296227 (+) True spinb
XM_039803706.1 mRNA downstream 270582 15298400 ~ 15306100 (+) False mak16
TU82426 other upstream 76984 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 233003 14786011 ~ 14794602 (+) False G61514
XR_005639552.1 other upstream 241496 14774543 ~ 14786109 (+) False surf4l
TU82454 other downstream 51056 15078874 ~ 15083448 (+) True G61535
XR_005639607.1 other downstream 270724 15298542 ~ 15298643 (+) True LOC120561495
XR_005639522.1 other downstream 403890 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 590067 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 590926 15618744 ~ 15618815 (+) True trnac-gca_20

Expression Profile