RNA id: TU82730


Basic Information

Item Value
RNA id TU82730
length 423
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G61754
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15224547 ~ 15224969 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcagacagagttacaacacgcacggataTGAGacgggtatgtatcgacttttctaactctgggggttacggtgaataagctaaagtcccaataagtcagcgtgttcctttaagatctTAATGTGGTGGTGGTGCTCATGGAAACCAATTTTGTCAAAATGAACACAGAATTTCCTGTAGTtgctttaaaaacacacaaaaatgaacAATGATGTGATCAATCAAGGCACCCACTGTGGGAACGACTGATTTACAGAAAATATAACTGAACTATTAAACGAATGAACATCATGTTAAACATTTGTCAGGAAGGTTTTGTGGTGTGAAGGAATTCAAAATTGTGATCTCAGTATTTATAATATCCTGTCTATGGCCCTGTTTGTGTGTTCTGTTGTGTCATCACAATAAAGTTTATCATCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82732 lncRNA upstream 82 15224114 ~ 15224465 (+) True G61756
TU82731 lncRNA upstream 532 15223122 ~ 15224015 (+) False nudt18
TU82698 lncRNA upstream 71996 15146100 ~ 15152551 (+) True G61730
TU82459 lncRNA upstream 196729 15027605 ~ 15027818 (+) True G61540
TU82458 lncRNA upstream 197147 15026441 ~ 15027400 (+) True G61539
TU82733 lncRNA downstream 15447 15240416 ~ 15241442 (+) True G61757
TU82736 lncRNA downstream 24775 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA downstream 81478 15306447 ~ 15314578 (+) True G61770
TU82761 lncRNA downstream 149808 15374777 ~ 15376002 (+) True G61782
TU82867 lncRNA downstream 307139 15532108 ~ 15532796 (+) False LOC120560526
XM_039803124.1 mRNA upstream 881 15219137 ~ 15223666 (+) True nudt18
XM_039803152.1 mRNA upstream 242930 14979874 ~ 14981617 (+) True LOC120560530
XM_039803151.1 mRNA upstream 242930 14980789 ~ 14981617 (+) False LOC120560530
XM_039803123.1 mRNA upstream 244750 14928373 ~ 14979797 (+) True cntrl
XM_039802201.1 mRNA upstream 299610 14891572 ~ 14924937 (+) True c5
XM_039803702.1 mRNA downstream 17881 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA downstream 17881 15242850 ~ 15252339 (+) False lrrc2
XM_039803705.1 mRNA downstream 56996 15281965 ~ 15296227 (+) True spinb
XM_039803706.1 mRNA downstream 73431 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA downstream 74266 15299235 ~ 15306100 (+) True mak16
TU82454 other upstream 141099 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 273926 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 429945 14786011 ~ 14794602 (+) False G61514
XR_005639548.1 other upstream 438438 14774544 ~ 14786109 (+) False surf4l
XR_005639607.1 other downstream 73573 15298542 ~ 15298643 (+) True LOC120561495
XR_005639522.1 other downstream 206739 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 392916 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 393775 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 394104 15619073 ~ 15619144 (+) True trnac-gca_21

Expression Profile