RNA id: XM_039803124.1


Basic Information

Item Value
RNA id XM_039803124.1
length 2223
RNA type mRNA
GC content 0.44
exon number 6
gene id nudt18
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15219137 ~ 15224015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtccAGAACCCATATTCAACatcgcctttattttgaaattcccgAACCTGAAGATTTTTATTTCCAGGTCAGCTTGAAGGTGTCAAATGTCaaaacagagcagcagcagccagcacAGTGGAAATGGAAACTTAACACGGTCGTTAATTACACACGACATGGAGGTGACGGAGAAGGGGTGGCAGCAGGTGGAGGAGCAGGTGGAGAGGCTGCTAAGTGGTCAGGGGTCAGAGGTAACCGCCTGTGACGTGGGCCTGGAGCAGAGCAAACCGGCGACTCTGAGGAAGACCGTCACCTACATTGTCTGCGCTGTCATCTTCAATGAGAAGGAGGAGGTGCTGATGGTGCAGGAGGCAAAGCCGGACTGTTATAAGCAGTGGTACCTGCCTGCCGGGAGGGTGGAGGTGGGGGAGAGCCTGGAGGAGGCGCTGAGGAGGgagGTGAAGGAGGAGGCGGGGTTTGACTGTGAGCCAATCACCTTGCTACTGATCCAGGAGCAGGGACCGCAGTGGATCCGCTTTAACTTCCTTGCTAAAgtcacaggtcagaggtcacacagaGCCTACACGCACGTTTGTACTTCTGTTCTTATGAGGACCCTCATGAACATAATTAACCAAACTGAGCATGACACTGTCGGATATCCCTCTGAAACATCTGGGGATGAGAGAGAACAAGAGGGTTTCACTAAATCTCTGACTGTTCTTACCAAACccacacatttttatatattgaaTACTGACCCTGACTCTGGCTGCTGTGATGCTTTCAGGTACCGTCAGGATCCCTGCCATCCTGTCACGTTACCTGTAGACCTGAGCTGCCGTCACGTGGTGCAGAGACTTGTCCTGGTCTTCACCAACGCTAAGGAACAGATCTGGGTCCTGCTTATCAAAGCCCCGGTGCTCCACCTTCCCACGGCGGCGGCGGTAAAGACTCACGCGGTGACGTGGGCGGCCAACATGGTGGTGCAGGAAGCCATGCCGTCAGCATATTATGACCAAGACGTCAACACGCTGGGCGTCTTCAGCCTGCAGCACAACGGGCGTCAGCATGGGAAGACAGACGGCGTGTGCTTCAACACGCTGGTGGCGCTGGTCCCTGACCACGTCCAACGCAATGAGGACGGAGAAAAGGTAGAGTGGACGGGGACGGGACAGCCTCCACCTGTAGAAAACCCTCGATACGTCTGGCACGAAGTCCAGAAACAAACACTGAAAGAGAAACTGCTGGAGAAGACCAAAAACACCTCCATTTTACCTATGCACAGCCTGTACTGACCACATTATATCACTGTATCATTCCCCAAGAGGACTCTTATTGTGTTAAGAACACTGTTGGCTTTTCTTAAAGgagattttattctgaaagtaAATGTCTTATTTAATTTATCAGTTGGATTGAAGAGTTTTAATGTCAACAGAACAATAAAATACTTATGTTATATCTGATTGATTCCATAAGAAAGATTCTAAACTttctttagagtgaaaaaaaacgCTTTAAATTAATACGCTTTAAATTAATACGCTTTAAATTAATACttcaatattttgggaaatacacttattctttttgtttcatatattatatacccAACCCCCAATATAACATGCATATATTAAACAGATGCTTATCGGTTTTAACAGTTTTAGAtgcaatattatattatatatggtTAAACAATATTGGCCCATTCTCAATCACTCAGAATAAAAGCCAATAGGTGCTCTACAGATTTACAGATACATATAAGTTAAAATaatcaatacatttaaataggcaaatatgtttaatgtatttctttaactgtctttaaaattaaaattagctTATCTTTGTTTAACCACAAACAAAACAGGTTGAAGGTATTTTAATATGACCAGAGGCTGCTGTTGATGTGGAGAGAGAACAAGCTGCAGGTGGGAATCCATTGACAGgtggttttattgttttcagAGATGAGGGAGAGGCACATCACACTCATGTTTGTTAAGGCGAAGTACCGCAGTGGATGGATATCTGTCTTCCACAAGCAGCCAGAACCTGTCTTGTTTTTATCTGCCAAGCAAACTTTGGCAGTAAGTTGTACATTAGCCAATtaaaaggaaggaggaggagatttttatttttgatgttatattttattgttatgGCTGATACCGTGGCAGGATcagcaaagagaaaaaagaaaagaatgctccgcataataaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K17817 NUDT18, MTH3; 8-oxo-dGDP phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82698 lncRNA upstream 66586 15146100 ~ 15152551 (+) True G61730
TU82459 lncRNA upstream 191319 15027605 ~ 15027818 (+) True G61540
TU82458 lncRNA upstream 191737 15026441 ~ 15027400 (+) True G61539
XR_005639594.1 lncRNA upstream 456642 14755450 ~ 14762495 (+) True LOC120561401
TU82398 lncRNA upstream 465081 14699525 ~ 14754056 (+) True G61514
TU82732 lncRNA downstream 448 15224114 ~ 15224465 (+) True G61756
TU82730 lncRNA downstream 881 15224547 ~ 15224969 (+) True G61754
TU82733 lncRNA downstream 16750 15240416 ~ 15241442 (+) True G61757
TU82736 lncRNA downstream 26078 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA downstream 82781 15306447 ~ 15314578 (+) True G61770
XM_039803152.1 mRNA upstream 237520 14979874 ~ 14981617 (+) True LOC120560530
XM_039803151.1 mRNA upstream 237520 14980789 ~ 14981617 (+) False LOC120560530
XM_039803123.1 mRNA upstream 239340 14928373 ~ 14979797 (+) True cntrl
XM_039802201.1 mRNA upstream 294200 14891572 ~ 14924937 (+) True c5
XM_039802199.1 mRNA upstream 332683 14878628 ~ 14886454 (+) True prdm12b
XM_039803702.1 mRNA downstream 19184 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA downstream 19184 15242850 ~ 15252339 (+) False lrrc2
XM_039803705.1 mRNA downstream 58299 15281965 ~ 15296227 (+) True spinb
XM_039803706.1 mRNA downstream 74734 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA downstream 75569 15299235 ~ 15306100 (+) True mak16
TU82454 other upstream 135689 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 268516 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 424535 14786011 ~ 14794602 (+) False G61514
XR_005639552.1 other upstream 433028 14774543 ~ 14786109 (+) False surf4l
XR_005639607.1 other downstream 74876 15298542 ~ 15298643 (+) True LOC120561495
XR_005639522.1 other downstream 208042 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 394219 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 395078 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 395407 15619073 ~ 15619144 (+) True trnac-gca_21

Expression Profile