RNA id: TU82733


Basic Information

Item Value
RNA id TU82733
length 1027
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G61757
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15240416 ~ 15241442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctacactgtaaaaacgaaaatgttgtgaaaactcaaaatttcaaggcaacttactgcactagatttttgagttttgaggccaactcaaactcctacgttttgaaaatagttcagccaactaataatgttttgttcaaataattaactttcatatgctgtgccaactaataatgttttgtttaaataatttatctttcatagatataaaaacttaaaatcttaagtttcacatactaaataattcaaaaaacagtcatgtcaactaattatcttttgttcagataattaacttttgtgtgtaaaaacaaaGTTTCGACTTCTAAAAAAGCCCCCGTGCAAAATAGgggcccatctaaagctgctgatcttgcatcacttgaGATAAAAGGGCCACTAGTGAAGTGACGCGCCGCAGAATactggctgaaggaagcctattactgctcaaagtctaacactgcaaaactccagctcttcttatcaaacgtaacagtcacttacctcatggttacaaatgtaaaccagcacaacaatgacaattaccaggcaacaaaacactacattctaaacagacacgtttaataaacggaattcataaagttacatttgtatttcgaacaaactgcaaacttttcagcaaagtttgacacaaccatttactgccttgcatcatgggaattgaccagccaatgaaccacctgactgcagtacgcaaatcggagttcaaggcatagagcaggccgaaaaggtaggcaactgaaaacccctgcagaactgcccaggaaaccctgttttagcgtggagcatgaaaagagtaattgacctggcctcaatttgagtctaactacaaattcaaagtggcgccaccatacattttgaagtgagaccaacttatcacaatacacttaatacagtgagttgaagtaactactttaacaaagtttataatgcaattatgtgttttttgttctgtttaattgaaaatcaaagtaagatgagcaatttcaagttctcgtttttacagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82730 lncRNA upstream 15447 15224547 ~ 15224969 (+) True G61754
TU82732 lncRNA upstream 15951 15224114 ~ 15224465 (+) True G61756
TU82731 lncRNA upstream 16401 15223122 ~ 15224015 (+) False nudt18
TU82698 lncRNA upstream 87865 15146100 ~ 15152551 (+) True G61730
TU82459 lncRNA upstream 212598 15027605 ~ 15027818 (+) True G61540
TU82736 lncRNA downstream 8302 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA downstream 65005 15306447 ~ 15314578 (+) True G61770
TU82761 lncRNA downstream 133335 15374777 ~ 15376002 (+) True G61782
TU82867 lncRNA downstream 290666 15532108 ~ 15532796 (+) False LOC120560526
TU82871 lncRNA downstream 291425 15532867 ~ 15572973 (+) True G61867
XM_039803124.1 mRNA upstream 16750 15219137 ~ 15223666 (+) True nudt18
XM_039803152.1 mRNA upstream 258799 14979874 ~ 14981617 (+) True LOC120560530
XM_039803151.1 mRNA upstream 258799 14980789 ~ 14981617 (+) False LOC120560530
XM_039803123.1 mRNA upstream 260619 14928373 ~ 14979797 (+) True cntrl
XM_039802201.1 mRNA upstream 315479 14891572 ~ 14924937 (+) True c5
XM_039803702.1 mRNA downstream 1408 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA downstream 1408 15242850 ~ 15252339 (+) False lrrc2
XM_039803705.1 mRNA downstream 40523 15281965 ~ 15296227 (+) True spinb
XM_039803706.1 mRNA downstream 56958 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA downstream 57793 15299235 ~ 15306100 (+) True mak16
TU82454 other upstream 156968 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 289795 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 445814 14786011 ~ 14794602 (+) False G61514
XR_005639548.1 other upstream 454307 14774544 ~ 14786109 (+) False surf4l
XR_005639607.1 other downstream 57100 15298542 ~ 15298643 (+) True LOC120561495
XR_005639522.1 other downstream 190266 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 376443 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 377302 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 377631 15619073 ~ 15619144 (+) True trnac-gca_21

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU3287 True 253 lncRNA 0.38 1 NC_035897.1 9491380 ~ 9491632 (+)