RNA id: XM_039803705.1


Basic Information

Item Value
RNA id XM_039803705.1
length 5490
RNA type mRNA
GC content 0.45
exon number 8
gene id spinb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15249744 ~ 15352625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAGCGCAGCTAGCTTGTCGCAGCGAAGAACCAAACGGAGGCAGAGCGGATCAATTTGGAGCCACGGCGGTTGATCGGGATTATGCGGCGACACTGATTGCTGTATCGGCTGAACACACTGTTTCCTCATCGCGTCCATCAGCTGTGACGTCGCCTGAGTCTCCAGGGTTTAGTCTCTACCCAGCCTGTATGCAGCCTGTCCAGGGCCCAGCCTAATTCCTGGTGCTCCTTACTTTtccaccacctcctccctcctttccctaccctcctcccccctctgccCCCTCCCTCCATTTTcacccccacacccacacacacgcgcacgcacacacacacacacacacacccacacgcgcacacacatacacacacacacaaacagccccCGGCCTGGTGTCACGCAGACTGACTACCAGCATTTAACCCCGGACCGGCGGCCTGGCTGGCTGCCCCCCTACAGGTGGATGAATGAAGACCCCATTCAAGAGCCCAGCGCCCCACGGCCCCCCCGACCAGACGGGGgaCATTCAGGTGTGTCTGCAAAcatgatgaagaagaaaaactcaCACAAGAAACAGAGGACCAGTGTTGGTCCCAGTAAGACTCTGGCTCAGCCCAGAAGGAATATTGTGGGCTGCAGGATCCAGCACATCTGGAAGGAGGGCAGTAAGTCGTCTCAGTGGAAGGGGACGGTCCTGGACCAGGTCCCTGTGAACCCATCCCTCTACCTGATCAAATACGACGGCTTCGACTGCATCTACGGCCTGGAGCTGCACAGTGATGAGAGGGTGGTGGAGCTGGAGGTCCTTCCTGACAGAGTGGCTCCGGCCCGTGTCAGCGACTCGATGCTGGCTGAAACAATGATCGGTAAAGCGGTGGAGCACATGTTCGAGACGGAGGACGGGCCGAAGGAGGAGTGGAGGGGGATGGTGCTGGCTCGAGCTCCCATCATGACCGCCTGGTTCTACATCACCTACGAGAAAGACCCGGTCCTCTACATGTACCAGCTGCTGGACGACTACAAGGAGGGAGACCTGCGCATCATGCCCGACTCCAACGACAGCGTGGCGGCGGAGCGGGAACCCGGCGAGGTGGTCGACAGTCTGGTGGGCAAACAGGTGGAGTACGCCAAAGAGGACGGCGGGAAGCGGTCGGGTATGGTCATCCACCAGGTGGAGGCCAAGCCCTCCGTCTACTTCATCAAGTTCGACGACGACTTTCACATCTACGTCTACGACCTGGTCAAGACCTCCTAAGACCAGAACGCCGGTCCAGGACCCCCAAAAAGACTTATTGAGACCTGCCTAGACCCACCGAAATAACCCTACCGAAATCCCCCAGTGAAGGAAAACTACGGCTAGGGTTTTAAACATCCACGATCTATAGAGACGCCTGAGACAAACAATATCATTCTTTACTCTTTCGCCTTAAACACAAGAAAACAAATGCGGTTATGGAAGCCCAGCCCCTTGCCAAGACAGACAAAACTACAACCAGCTCCAAGTCTTCAGGTGTATCCAGTCATCTTATAATCCATCATTATTGTCCAGATTTCTTTTGACTCTGTTTGGATGCTTCCTTCGACACAAAACTGGTTTGTGGGCCCCAAAGAAGACCAGGGATCCTGTGTTATATGGAATAACTTAAACCTGTATTGTTAAATACTATTTTGGAACATTTGTGGCGGTAATACACAAAAACTTGGCTAAAATCGAAGAAGCGGAGACCGGATCCTGAGATCCtccagacaaaacaaaaacgttTTCTGACCCAAATATCATTTGTTCCAGAGTCAAAGCAGGTCTGAAACTATTAAGGTAAACAGAAAGACCTCATCCCCCCCTTTCCTGAAACCCTGTCAGACCGCTTAAGCTCTCCGTCGTCAGAGGAAGGGGGACAGACAGGTCTGAGTCTGCCGGGGTTAATGAAGGGATGGGACTTTAGGAAGACAGAAACCTGTTGATGAAGTGAAAGCTGACCCATCGTCTGTCTCCATCTGTATTTATAGAAAGTGTAGGTGGACTATTGTGCTATTAGAGGTCCAAATACAGAGGATTTTACTTAACCTGCCTACCTGCAGGTCACCTGTTCACAAACAAAGACGCTGAGTGGAATAAAGTGTGAAGGAAGCTGTGGAAAAACCAgaggatacagagacagactgttttctttttacattcttttagcatttggctttttttttttttttcctgatgcTGCTGATTCCTACATTACCCATAATGACTTGCATCAGACAGTGGGAGAGGCTCAGGTGTGTTTGTTTGGCTGCATCAGTTGGTCCAAAGTGGCCTGTTAGCATTGTTGGCTGTCCTCATAAACTGCTCGTGGTCGCCGCCCAGATTCAGTTTTCAGTAGGAATGCTAATGATGCTAACGAGCTACTTCCCAAGTGGTCTAGAACCTCGATAAGCAGGATGATGATTAACTATTGTTCGCACAAACTTTTCATGGATTCTGGTCCAGATGAGAACTAGTTCAGGTCAAAGAAACACTCTTGTTGGTCCTAGATTATTTAACATTTATAATCAGTATAGAACCATTACTTAATGGTTTATAACAAACTAGGATGTAGTTGTAAGTAGATATGGGTTTATTAATGTTAAGTATTTGTCAACAATTTTAACTTCTACTATGAAGACAATAATTCTACGAGTTATAGTTTTTAAgtaatacattaataaacactCACATGGTGTGTTATAAACCTTTATTACATGTTTATTACTGCTTATAAATGTTAAATAAGGTGTTGAGTTTAttttggagcaaagacaaaaTGTCTGAATGTTCCTTTAATGGCTTCCCTGGGACAGCTGATGCAGGATTGATCAGTTTAATAAAAGCCAAAATGCCGGCACAACTGACAAATCACTGAACCTGAAGGTAAAACTGTAGCAGTCGTGATGCCCCGCCCCCTGTCTGAGGCGCACttttctgattggttggactCAAGCACAGCTGTGGTTTGTTACGGTCCAAAccagtcatccagtgttcatCTGTTGGAAGTTgatttatatgtttttataaaagaaaatctTTTCCCTTCTTATCTCTTCTTCTGCTTTCCCATCAACGCCCTGTATAGTTACTTCTTTGTTTATATGAGCCGGCACATTCAGATCgccttgttttctttgtatATTATCTCTTTGTTGGTTTTATGTCACATCTCTTCTGAtctgtgtatactgtatatgaccCAGTTAGCTGTAGGCTTATGGCTGAAATTCACATTTCATCCAAAATGACTGAAGATTTTATCCAAACTGCACTCCACAGATCTGTTGGTGTGTAGGATTATTTTGTCTAACTGTTTGCTGACTGACAAATCTCTCCTTCCCTGAATGGAGTCTGGGTTGGGGCGCTCTTCCCTTGCAATCACTTCCTAGCTCCCTATAAACCACTCTTTTAACAGTTAGACCTCAGTCAGGGGTTGATGGAGGATACTCGATCTCCCACAATGCTGTGCTCTTACCTGATGTAGCTTCACCCACCACAGACATAACTTTAACATTAGCATAAACAGCCATGTTGCCTGATCCACGTCCCGTGTGCCTGAAGGGActcaaacatctgaaattcctttttttttttttttctttctttgtttttttttttaaaagagcgTAAATGTTTCCAAACCagtgctttttctttttggatGCCAACTGTTTTAAATCTAGGACACTCCTGGTTCAAGTCTATGATGTGGGTTCCACAACATTTCGTTCAGTTATGAATATGATGTGTTCTGATTCTAGAATTGAAAGCACCTGCATTATTGTTTTAGAATATGTTGTTTGATATTGTGGAACGTATTCCATCAACCTGCCAATTCTAGTTctagaacatgcaaactccggAATATGAAAGTTCATTCTGTGGAGTTTTTAATAACACAAAATTCTCACAGTGTAACCCACACATACTAAATTATCAGTGTCAGGCTGTGGTGTTCCAGAAACTTTTCTTCAAtttttttggaaaactttgATTTTGTGGAATGTGTCCCATCACAATGTGTGCAACATGTATAGAACCCTCCCAttctgacaaaaaaatgttgaaggaAGCACATGTTCGATTCATTAGATTTCCTAGAAcgcatcccaaaaaaaaaatcgtgtGAGCCATTTTTATACAAACACATGTTGAAGGGTGAACGCATTTGCTTTCAGCTTCAGATTCTAGAGAGACTGAGACTGGTTTTGTAATCTGGTTTGGATATGTGCATTCTCAAGTCTGGGGTCCGGGATTCTAGAATAATTTGACCACATTCCTTTTagaatctttatttttttgtgttgatttCCCTAAAAAACACAGCTACAAATTCTCGAACACTGAGACCAGAAACCCACGCGTTGTGATTCAGGAACACGTCTGGTTTCTCAATTGAAAATCTATTCAAAACATCTGCAGACGGAGAGGACAAAAAAGGGCAAACGTGATTTATTAACTACATAAAGATGTTGGCGTTAAGATGTCAAAACCGTAAACCACAATTAATAGTATTGTAATCATAAGAAAACCACTTATGACAGAGGAAACCTCTACAGTTCCAACATTCAGAGAGCAGACActgttgtttctttgtttcaGGTAGAAATGTTTGTTTGATCTGCTAGCTAGCTCTGCCTTGGTTCCCTCCTCGCTTTCTTCTATCTAATCTTTACTCCGGTCACCTAGGAAACGTCCAGAAGTTGTTGGACTGTTTGTCTTTCAGTCCCATTCAGAGAAAGCAGCCGGTGTCCGCTGATTTAGTCTCTGCTGCCGTTTAAACCGCCAAAGTTAACCTGgatacccacaatgcacctggCTTCAGTGGATGTTTAGACCGTAGTCAGGCTCCTGGGCGATGGATGGGGGGGTGGAGACCAGTGTCTGCGTGGATCTTCACCCTTCATGATGTGGACATCAGTAGTCGTCTGTTCCGGAGGCGACACCCTGTTCGTATTTTACAGAAAAACATTGATCTATTGTGTGCgcgtgagtgcgtgtgtgtgtgcgtgcgtgcgtgcgtgtgagaaTGAGTGTATGTGCTGTCGATCAGCCCCTGTTCAGAGAAGTGTTGTTTTTGCATGCCTATATAGCTCGGTGTAAATCGATGTGAGTTGCATGTCTGTGTAGTTTTCAGTTGTTTGGCTGACTTCTATCTGTTGTGGCTTTTGGTGCCTTTCGTTTGATTTCTCCGTTTTTCTTTCCCGGTTTGTTTGTACAGTGTGTTccagaggctgctgctgctgttttttggGGTTATTGAgcaaaaaatagaaaatgaaaacaaagaaaaatcctCCTCCAAACAGAATTGACAGCAGTTATTATCATGAGGTGATGACGGGTGTGAATTCAGTTTCTGGGTGGATTGTCCCTTTAAAGTGTGCCAACTACAGATGCCAGTGTTGTACAGCAGTGAAAAGCTTACACTATTTACTAAAATAAaccatttctctgtttttttca

Function

GO:

id name namespace
GO:0007276 gamete generation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82733 lncRNA upstream 40523 15240416 ~ 15241442 (+) True G61757
TU82730 lncRNA upstream 56996 15224547 ~ 15224969 (+) True G61754
TU82732 lncRNA upstream 57500 15224114 ~ 15224465 (+) True G61756
TU82731 lncRNA upstream 57950 15223122 ~ 15224015 (+) False nudt18
TU82698 lncRNA upstream 129414 15146100 ~ 15152551 (+) True G61730
TU82749 lncRNA downstream 10220 15306447 ~ 15314578 (+) True G61770
TU82761 lncRNA downstream 78550 15374777 ~ 15376002 (+) True G61782
TU82867 lncRNA downstream 235881 15532108 ~ 15532796 (+) False LOC120560526
TU82871 lncRNA downstream 236640 15532867 ~ 15572973 (+) True G61867
XR_005639523.1 lncRNA downstream 243128 15539355 ~ 15539844 (+) True LOC120560847
XM_039803702.1 mRNA upstream 29626 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA upstream 29626 15242850 ~ 15252339 (+) False lrrc2
XM_039803124.1 mRNA upstream 58299 15219137 ~ 15223666 (+) True nudt18
XM_039803152.1 mRNA upstream 300348 14979874 ~ 14981617 (+) True LOC120560530
XM_039803151.1 mRNA upstream 300348 14980789 ~ 14981617 (+) False LOC120560530
XM_039803706.1 mRNA downstream 2173 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA downstream 3008 15299235 ~ 15306100 (+) True mak16
XM_039803723.1 mRNA downstream 120229 15416456 ~ 15430582 (+) True LOC120560841
XM_039803724.1 mRNA downstream 135481 15431708 ~ 15434935 (+) True zgc:101664
XM_039803725.1 mRNA downstream 139514 15435741 ~ 15467408 (+) True LOC120560844
TU82454 other upstream 198517 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 331344 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 487363 14786011 ~ 14794602 (+) False G61514
XR_005639548.1 other upstream 495856 14774544 ~ 14786109 (+) False surf4l
XR_005639607.1 other downstream 2315 15298542 ~ 15298643 (+) True LOC120561495
XR_005639522.1 other downstream 135481 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 321658 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 322517 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 322846 15619073 ~ 15619144 (+) True trnac-gca_21

Expression Profile