RNA id: TU82867


Basic Information

Item Value
RNA id TU82867
length 664
lncRNA type sense_over
GC content 0.34
exon number 2
gene id LOC120560526
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15518780 ~ 15532796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTGTTTTAATATAATATCTTAAAATATTTAGAGTGCTTGATGCAACAAGAAGGCTCCCTGTCTATATCCTCAGGCTTTTCTTACACTCTGTGTTTCCTGTTCAATGAGCTACAGCCTGATTATTGTCATTGCAGTTTAAATGCACATCATTTATAACGACTATTCCTGTTATCATTTATATCATTCAGTATCGTTATTACACTCCGACCATAGTATATACTGTTTTGTGCAGTATTGTTCTGTAACTTCTACACCACCAAGGTCCATGTTGCTGTACTGGAGTTTTTGATCGAATGATCGTCCTCCttttaatcctatttgaatgtgtatttttatattgtcTTGTGATCTTTTTGTAATGTCTTTCTGTCTAATGTAAAGCACCTTGTTGTTGAAAGGTGTACACTAATAAATGTAGCTTGACATTCATGACTTTGTATGACATATGTATGACacatgtacgtgtatgtgacaataaagtacctttaccagAGCCGTatatatctcaacaactattggaggGATTGTGATGAAATatcattcatgttcccctcaggatgaattgtaaaaacttttgtgatcctctgacttttcatctagcgctATCAACAGGTCAATATTTTAACGTGtcaaatactttggtttatgaccaaatacatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82761 lncRNA upstream 156106 15374777 ~ 15376002 (+) True G61782
TU82736 lncRNA upstream 179483 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA upstream 217530 15306447 ~ 15314578 (+) True G61770
TU82733 lncRNA upstream 290666 15240416 ~ 15241442 (+) True G61757
TU82730 lncRNA upstream 307139 15224547 ~ 15224969 (+) True G61754
TU82871 lncRNA downstream 71 15532867 ~ 15572973 (+) True G61867
XR_005639523.1 lncRNA downstream 6559 15539355 ~ 15539844 (+) True LOC120560847
XR_005639524.1 lncRNA downstream 8073 15540869 ~ 15545477 (+) True LOC120560848
TU82947 lncRNA downstream 224794 15757590 ~ 15777141 (+) False mctp1a
TU82990 lncRNA downstream 410944 15943740 ~ 15961114 (+) False fam172a
XM_039803140.1 mRNA upstream 11703 15508922 ~ 15520405 (+) True LOC120560525
XM_039803725.1 mRNA upstream 64700 15435741 ~ 15467408 (+) True LOC120560844
XM_039803726.1 mRNA upstream 64700 15452053 ~ 15467408 (+) False LOC120560844
XM_039803724.1 mRNA upstream 97173 15431708 ~ 15434935 (+) True zgc:101664
XM_039803723.1 mRNA upstream 101526 15416456 ~ 15430582 (+) True LOC120560841
XM_039803730.1 mRNA downstream 25708 15558504 ~ 15562994 (+) True LOC120560850
XM_039804631.1 mRNA downstream 72170 15604966 ~ 15612582 (+) True LOC120561471
XM_039802831.1 mRNA downstream 104002 15636798 ~ 15775516 (+) False mctp1a
XM_039802834.1 mRNA downstream 104002 15636798 ~ 15775516 (+) False mctp1a
XM_039802832.1 mRNA downstream 104002 15636798 ~ 15775516 (+) False mctp1a
XR_005639522.1 other upstream 97665 15431708 ~ 15434443 (+) False zgc:101664
XR_005639607.1 other upstream 233465 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 448660 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 581487 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 737506 14786011 ~ 14794602 (+) False G61514
unassigned_transcript_259 other downstream 85089 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 85948 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 86277 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 230318 15763114 ~ 15777141 (+) True mctp1a
XR_005639530.1 other downstream 935527 16468323 ~ 16475897 (+) False LOC120560890

Expression Profile