RNA id: TU82871


Basic Information

Item Value
RNA id TU82871
length 4633
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G61867
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15532867 ~ 15572973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttatgatttgatactataaataaaattgaattgaattgaattcaaccgttagctcgttagcatgctaaccgttagcattagcatgctacgtcgttctcaatagcaaagcactgctacaacacacacaagttcaccataatctacaaaagaattacttacatgtgcgccctcatttagaagtctcccagctaatcctgccttgtaactgaccaaagttggagaaatagcctcttttactgtctctagagttagctagctgacatgctctacatctgagctactgagcatgtgcgagtgcaatcaaagatagtacagaagaagaagatgaaaacaggtctcactctgtagctaaaacagaaaccaggtgaaaaaaggatctgcagcagtgagagagagctgtgcagtacaacaaaaatatggtgttttttgaaaatcaaaccatgtaaacctattctggtacaatcttaaaatacagttatgaacctgaaaatgagcataatatgggcgctttaaattcCTTGCTCCCTCATGAGcatataaaataaagacactgaagaaattggactctaaaatctagaaactataaagataattaagtaataaattccatgcacaccgtaaacatgaatggaacagagtatattcatcagttatttccccccagcaatatataaggtcaaaaaccattgaggtgtcctctccctgttgttacatgaatgtacagtagcctacatcactaggtagttactggtccagtgaactaagactataatttgggaggattgtacaataagaatatgttcttaaaattgtacaatcctcccaaattatagtcccagtttactggacaacacaaattgtgtgctaagaatgccaaatacaatgcaaacatgatccgtattgttaaagaataaaaaaaaaaaataatgtatcaactaaaataaatcaaggtacattggtcaactatagaaatgtacagcattgtatgtattgcctttaGTAACCGACTtcatataaaacacatttgaaattttatcagccttttcttaTCATCTCAACAGCTGCCGTAATATAtccatcaaacttctaacaacaatatgaacagcagtacatacagcaatataaccgtaacaatgactgtcacatgagtaattataaaaaaaaaaaataatggtcataACTTTacataataacagtacttaaatgaacagcaatatgcacctgttgaattttaatccaggctgataacaatagggtaaaaccactgctgggtgatcagaaaaggctgcaggattaaataaatcctggctgttagccaggtcaggagcaggctagctgcacagaataaatctccatggtgatttatgtgcctccgttttcgtgaaaccgagtcaaggctaaattcatccaggataactggaatatcccggcttaatcccttatcttggttttgtgaaacaaacAAAGATGATGTTTCTATCATGGGGCTAGCACATTATTGGAAGAATATAAACATCTGAgggcagggttcaaaattaacttttcgtccaccagccaaatggctagtgaatgtttaaatttgaccagccactcaatagactaccattgtttttttggctagtaagtgaagcaaatctaccagccaccaGCATTTGGTGTGTAGCTCgggctaattttgaaccctgtctGTGAAGAATGAGAGTGATTTACATGAAGACGCCAATGTGAATGAGAGACAACAAGATTCGGGAAGTTCTGTCGGTAAGGGCTGATgccaaaattgtcaaaaaatgtaATGAACGGAACTAGCCAGGTGCCACCCCTGGCCTAGATCAAACAGATTATTAAGTAAGAACGTTACATGTGTAAAAGGAAAACTCAAGACATTGTCCAGAGTTCATATGAGACAATGGCTTTACTGTCACATAGTGAACTGGGGTTTGAAAAAACCTACATAACATCCAGAGAACTGGATTAGTAGCCATATCATTTGATTTTTAGTCAGAAGTTCCCATTTCTACACACTTCAACAGActatttttgtttgtctgtatgagtcATATGGCTGTATTAATGTCTTTTCCCTGTGTGTCGATTTAATTTTTTCCTCAATAACTTTGTGTAATCTGAAGATGGAGACATCGATCTGTAATGTAGTCAATAAATGTAAACCTGCCACCTTTGTCGTTGGGCTGTCTGCAGTTTGTGAGTTTCTAACTCAgaaatatataacataatagaaacaacagaaacaacagcagcacaaccacAGCAAATGTCCATTTTCTTCTCTTATGATGGTACTCTTCTTGGAGCTTCCTGAGGCTGGTTTTCCCCTCCTCTAGGCTTTGTTTATCCTCTTGACGTATTCGTTCCCAGGTCTCCTTTCTTTCCTTATCCCAGGCATCTCGATCTCTCTTCGTCTCTTTTCTAAACAGCTCCAGCTTCCTCTCAGCGTTTTCCTTTAGCTCTCTTTCTAACTGAACGGTTTTCTCTGAAGCTTCCAATTTTCTTCTCCATTCCTGTCGCAGAGTTTCTTCTTGCTTTTTgcgtctcctctcctcttcctcccgttctttctttctcttctcacGCTCCTTGTTGATGCATTCGTCTTTTTCCTGTAGCTGTTTTTCTCTcagtttcctctcctcttctttgattttgcttttcagtgttttcaAGTCTTCCTCGTGTTTTCTCCGGAGGTCCTCATCCTTTCTCTTCATctcttcttccttctctttcAAGATGTTCTGCACTTGCATTTGTATGTATCCCTCTGTGTCGTCAGACATCTCATTGTTGTAGCAGCCGCCATTTTCCTTCACCATGGTCTCGATATTGGTCAGCAGCTCTCTGACTTGTGTGCGGTTTGTGTCATCTTTGTTGTTGAAGACCTGGTATCTCCCTCCACAGTCATTGATGAGTTTTTTGACAAAGCCATCACAGTTTTCGACATAACTCTCAAATAACTGATCCTCCAGATCATCTCCTCTGGTGAATATAATGATGATGAAATCTTCAGACTTCTTGCCAAAATATTTCTTGATCAGTTCCACAGAGTCTTTTTCCTCTTGTGTGAAGTTCCCAATCTGCAGCACCAGTAAGAACACATGAGGTCCGGGAGACAACATGctgatgcatttttttatttcctgctGACCTTCATCATCAGACAAAGTCTTGTCGAACAAGTCGGGGGTGTTCACGACAACAACTGGCCGTCCCTCAATCTCTCCCGTTGCTTTCTTACAAGACTTTGTCGCTGGCTTCGGTGTGATTCTGGGTTTGAAGTGCTTTTCGCCCAAAATGGTGTTTGCTGTTGCACTCTTCCCACTGCCAGTCTTCCCAATCAGCACCATCCTGAGACACTCTCTGCTCTGACTCTCACCATCACCTCCTATGGCCGTCTTTTGTTTCACATCCTGCAGCTCAGCTTCAAGTCTTGAAACCTTCTCCATCTGAGCCTTGGTGAATATGTCCTTTGTGAAGCATCGGGATCCTTCAACTCTCGTCTTTTCAACAGCATCCAATAGCTCTGGGATCTGCTGCTGGTCCTTGATGTTGAGAACAACatatcttcctccacagctctgacagagctcctgGATGCCATTGTCTTTCTTTAGAAACTTAACAACAGCTGGAGCTGTAGGATCTGACTCCACAGTGAACAGAATCATGGTGAAGTGATTGACTCGAGAGCTGAAAGTGTTCTGGATGGTCTCTAACTCTCCCTTGTCTTCATCAGTGAGGGGACCCACAGGTAGGACCAGGATGAAGGCATGGACACCCTCAGGATCACAGAGGGAGATACACCTGAATGATTCCTCCATCACTTTCTCCTGACCTTCTCCATACAAGGCAGGCAGCTCCACCAGGGACACCCGACGTCCACACACCTCTCCCTGATGTTTAACACACTCTGATGGGTTGGAGACTGAATGGAGCTCTGTCTGACCTAAAATGGCCTTGGCTGCTGAAGTCTtccctgctcctctcctcccaCACAGAACCAGGTTTAAAGCTGGTCTGATGTGTCCAGATGTTGGTGTCATGATCAAACCTGCATCCTCAAATACATCACAGCTCACATGCTCTCCATTGTGTTCCGTTGCAGTTTGATTTAAACGTGTTAACAGCTCTGAAAGTTCAAGGTTCTTCTGCTTCAAGTATCTGTATCTACACATTTTGATCATGTCTTTTAATGACTGGTCTGGTTCATCTTTGTCTTTGAAAGCTGCGCTATCCTCTCTGGGTGTTGATATCAATATCAATGAATGGTCAAATGATTGATAACCGAAGAGTTTCAAGACTTGGCAGAGCTTCACTTTGTGTTTCTCAGTGAAGTCTTCAGGCTGTAGAACCAGCAGGAACACATGAAGGCCAGGATCAGAGAGTCTCCCACAGTTTTCTAAATGTTCTGTCAGTTTTTCTTCAGAGATGTTGGGGTGCAGCAGATCTGGAGTGTTGATCAGAACGATCCCTTTGTCCTTTaactgtcctctttctctcagaCAGCGGTCTGGTTCTTCCTCAGTGTTGAACACAGTCTCTCCCAGTATGAAGTTCCCCACTGAACTCCTCTCAGACCAGCTGTTCCCCAGCAGAACAACCCTCAGCTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82867 lncRNA upstream 71 15532108 ~ 15532796 (+) False LOC120560526
TU82761 lncRNA upstream 156865 15374777 ~ 15376002 (+) True G61782
TU82736 lncRNA upstream 180242 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA upstream 218289 15306447 ~ 15314578 (+) True G61770
TU82733 lncRNA upstream 291425 15240416 ~ 15241442 (+) True G61757
TU82947 lncRNA downstream 184617 15757590 ~ 15777141 (+) False mctp1a
TU82990 lncRNA downstream 370767 15943740 ~ 15961114 (+) False fam172a
TU82991 lncRNA downstream 388628 15961601 ~ 16045838 (+) True G61966
TU82993 lncRNA downstream 462478 16035451 ~ 16056705 (+) True G61968
TU82995 lncRNA downstream 475410 16048383 ~ 16049879 (+) False G61970
XM_039803141.1 mRNA upstream 239 15518780 ~ 15532628 (+) True LOC120560526
XM_039803140.1 mRNA upstream 12462 15508922 ~ 15520405 (+) True LOC120560525
XM_039803725.1 mRNA upstream 65459 15435741 ~ 15467408 (+) True LOC120560844
XM_039803726.1 mRNA upstream 65459 15452053 ~ 15467408 (+) False LOC120560844
XM_039803724.1 mRNA upstream 97932 15431708 ~ 15434935 (+) True zgc:101664
XM_039804631.1 mRNA downstream 31993 15604966 ~ 15612582 (+) True LOC120561471
XM_039802831.1 mRNA downstream 63825 15636798 ~ 15775516 (+) False mctp1a
XM_039802834.1 mRNA downstream 63825 15636798 ~ 15775516 (+) False mctp1a
XM_039802832.1 mRNA downstream 63825 15636798 ~ 15775516 (+) False mctp1a
XM_039802833.1 mRNA downstream 63826 15636799 ~ 15775516 (+) False mctp1a
XR_005639522.1 other upstream 98424 15431708 ~ 15434443 (+) False zgc:101664
XR_005639607.1 other upstream 234224 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 449419 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 582246 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 738265 14786011 ~ 14794602 (+) False G61514
unassigned_transcript_259 other downstream 44912 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 45771 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 46100 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 190141 15763114 ~ 15777141 (+) True mctp1a
XR_005639530.1 other downstream 895350 16468323 ~ 16475897 (+) False LOC120560890

Expression Profile