RNA id: XM_039802838.1


Basic Information

Item Value
RNA id XM_039802838.1
length 3898
RNA type mRNA
GC content 0.46
exon number 22
gene id mctp1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15636798 ~ 15777141 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATTAGCGGGTAACTGTTAGCATCACCTTACAGTGCGTGAACGGTGCAACAAATGCTGACATAATCTCCCCACCGccattattttgtgtcttaacTTGCTGCGTGCTTATCACCAGTTGCCCCAGCATCTACTCTATCTTAACATGGCCTGACTCCCGGAGCCACTTCTACCTCTTATGAAAATGTGTTTCGGACACATAATGGACATGTTCATCACCACACTTCGAGGAGGCATGCTTCGCACAGGAAAGACCCAGCCGCCATTTGAAAGAGGCCCTAAAGATCCAACACAGACATTATGTATTGAGCATCAACATAGTGGGGCCCAGTAATGCAGAGCCCCCACCTCAACCTCCCAGTCCAGCCATGTACCAGCTGGATATCGTTCTAAAGAAAGGGAACAACCTGGCGATCCGAGATCGGACAGGGACCAGTGACCCATATGTGAAGTTTAAGGTTGCAGGAAAGGAGGTGTTCAGGAGTAAGACCATCCATAAGAACCTCAACCCAGTGTGGGACGAGAGAGTAAGTCTTCTGGTGGAAACCCTGAAGGACCCGCTATACGTCAAGGTTTTTGACTATGACTTTGGACTTCAGGATGATTTCATGGGCTCAGCATACCTCCACCTGGAGTCACTGGAACATCAGagGACACTGGATGTGACGCTGGACCTAAAGGACCCACAGTACCCTGAAAATAACCTGGGCAGCCTGGAACTAGCTGTCACTCTGTCACCGAAGGAGGGAGACGTGAGGGATGCTACCATGCTTTTGAGAAGGAACTGGAAACGATCTAGTAAGTACCAGAGTATGCGTCTGTCAGATGTGCACAGAAAAGCCCAGCTGTGGCGAGGTATAGTCAGCATCAGTCTGATAGAAGGACGCAACCTCCAGCCCATGGATGCCAACGGCCTCAGCGACCCTTACGTCAAATTCAGGATGGGGCACCAGAAGTACAAGAGCAAGACAATTTCCAAAACGCTGAACCCCCAGTGGAGAGAGCAGTTTGACTTCCACATGTATGATGAACAGGGAGGCTACGTGGACATTACGGTCTGGGACAAAGACGCTGGCAAGAAGGACGACTTCATGGGCAGGTGTACCATCAACCTGTCGCATCTCAgtaaagaacacacacacaagctggaCCTGCCCCTGGAGGAAGGTGAAGGTGTGCTGGTGCTGCTGGTTACACTCACTGCTTCTGCCGCAGTTTCCATCTCAGACCTGTCAGTCAACATGCTGGACGACCCGCAGGAGAGACACCAGATCATGCAGAGATATAGCCTGTGGAGGTCGTTCAACAACCTGAAGGATGTCGGGGTGGTGCAGGTAAAGGTCATCAGGGCTGAGGGACTGATGGCAGCAGATGTCACAGGTAAGAGTGACCCATTCTGCGTGGTGGAACTGAGTAACGATCGGCTGCAGACGCACACAGTCTACAAAAACCTCAACCCTGAGTGGAACAAGGTCTTCACTTTTAACGTGAAGGACATCCATTCAGTACTTGAGGTCACTGTTTACGACGAAGACCGAGACAGAAGTGCAGACTTCCTGGGGAAAGTGGCTATTCCTCTGCTAAATATCCAAAATGGAGAACGCAAAGCCTACGCCTTGAAAAGCAAGGAGCTGACAGGGCCAACAAAAGGGGTCATCTTTCTCGAAATAGACGTGATTTTTAATGCTGTGAAGGCTGGTCTCGGGACGTTGATTCCCATTGAGCAGAAGTACATCGAGGAGGAGCCCAGAGTGTCCAAACAGCTGCTGTTGCAAAACTTCAACAGAGTTAGACGCTGCATCATGTTCCTGATCAACACAGGCTGCTACATCAACAGCTGCTTTGAATGGGACTCTCCACAGAGGAGCATCTGTGCTTTTGTActTTTTGTCATCGTTGTTTGGAACTTTGAACTCTATATGATTCCTCTGGCTTTGCTACTGCCTTTGGCCTGGAACTACATCCTAATCGCATCGGGGAAGGATAACAGGCAAGACGTGCAAGCAGTGGAGGACCTGctggaggatgaggatgaggatttTGACAAAGATGACAAGGACCCTAAACCAGGCCCCTGGGAGGACAGCCGTGATAAAAACCATATCCTCGAGGATATGTTGGCTTCCTGGCACTTTGAGTGGATACGAGCAATGGTGGACTCGGAGAGAAAGGGCTTCATGAACAAGCTTTATGCCATTCAGGACGTGTGCATCAGTGTGCAGAATGCACTGGATGAAGTGGCCTCCTACGGCGAGAGGATAAAGAAcaCATTTAACTGGACTGTGCCTTTCTTAAGCTGGCTGGCCATCGTGGCTTTCGGCGGGGCCACCATCATCATCTACTTCATCCCCCTACGATACATTGTGCTAGCCTGGGGGGTGAATAAATTCACCAAGAAGCTGCGAGACCCTTACATCATTGATAACAACGAGCTGTTAGACTTTCTATCCAGAGTGCCCTCAGATGTACAAGTGGTGCAGTACCGAGAGCTGAAACTGGATCCCAATCCCAGTCCaaataaaaggaagaaaaacaacCCCGGGTAGATGACTGTGTCCGCCCACCAACTCTTCTCTTCTCCACTTTTCTTCTCGTGGTCTTATTACTGGACGCTAAGGAGCAGAGGAAGACAGCTCCGTATCAGCTCGGCTCAGCTatccttcctttttttctttcctcttttcttctctaaaacctcattttttttctgtcgTTAATTGCTCAtgaagtacagtacagtacagtttcCTGAAGTGTAATTTTTGTATAAAAAAGACGAGTACAAGAAATATTCCCATTTATGTTTTTGATTAAGTTTAAAAGGCGATGAAAGGATGTTTGGAATGACCTTTTTCTCAGCCGTGTGAGCcactcttctcttttcctctctccatcACTCTGACAGCTCCGAGCACTCTGTCCATCTACTCGCCACGAGTGACAAGTGTCACACAATGAGTAAAACGAGCTTTAACATTTAAACTCACCGTCCCCAAAATACATTTGTAGTGTATCCGTGCTTATCAAAATACAAGCCTGCATTATAACTCTGCAATAgacttttaagttttttttagctcatattgttcttattattaaatgtttttggtaatattgttcatattttctaATTGTTTTTGTACTGAAGAACCTTTTGTTTACTTCCTCTCTTGGATCGTAATGATGTTATGTTCACTGGCAGTAATTTGGATTGTTTCCACTTAACTCAGCCAGCCAAGTTGATTAGCAATTATGGTCGTAGCCTCCAGATATGTCCatctacacaaacacaaagctgGACCAACAGGCTGAAAGCTTGTGCTGGTATCTGTCTGTGCTTTTAATACAAGGGCCAAatttgcttcttctttttttttaaagatattaatccaaaaaaaaaaaaaaaaatcaaaccacAGTGGACAGTGGTATTAGTTTAAAGTACAGTGAGTCTGTTCTTCTTAAAATAGATTGTGATTACATAATCATAATTAAATAATACCCAGAGGATAAAGGAACATCACTGTAGAGGATTAAACAGTTTGTATTTTGCCCCAAACCTTTATCACTACTAAATATCCAgataatttagctgtagcctcgTTTAACCCCTTAAAAACGTGTCAAAGTCCCCTGTCAGCCAATCATCGAGACaccttctctgtctgtcaggaGGCGCAGCAGACTGGGCCTTCTGCTGTCGTTAATATAGATGTCACCCAGTCTATGCAGAGTGTCGCCAGGCAGGCCTTTAGGCAGCCACAGCCCTAATCTTGTTTGAAAGGCTGGTCTCCTTTCCTCTCATCTCTCCGTTTGCCTTGGCGGCCACACAAGACAGCattcacacacgcacgcacacacaagcatgcatgcagacacaaaagaaaagaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82871 lncRNA upstream 69660 15532867 ~ 15572973 (+) True G61867
XR_005639524.1 lncRNA upstream 97156 15540869 ~ 15545477 (+) True LOC120560848
XR_005639523.1 lncRNA upstream 102789 15539355 ~ 15539844 (+) True LOC120560847
TU82867 lncRNA upstream 109837 15532108 ~ 15532796 (+) False LOC120560526
TU82761 lncRNA upstream 266631 15374777 ~ 15376002 (+) True G61782
TU82990 lncRNA downstream 168224 15943740 ~ 15961114 (+) False fam172a
TU82991 lncRNA downstream 186085 15961601 ~ 16045838 (+) True G61966
TU82993 lncRNA downstream 259935 16035451 ~ 16056705 (+) True G61968
TU82995 lncRNA downstream 272867 16048383 ~ 16049879 (+) False G61970
TU82996 lncRNA downstream 272867 16048383 ~ 16050693 (+) True G61970
XM_039804631.1 mRNA upstream 30051 15604966 ~ 15612582 (+) True LOC120561471
XM_039803730.1 mRNA upstream 79639 15558504 ~ 15562994 (+) True LOC120560850
XM_039803141.1 mRNA upstream 110005 15518780 ~ 15532628 (+) True LOC120560526
XM_039803140.1 mRNA upstream 122228 15508922 ~ 15520405 (+) True LOC120560525
XM_039803726.1 mRNA upstream 175225 15452053 ~ 15467408 (+) False LOC120560844
XM_039802830.1 mRNA downstream 36169 15811685 ~ 15938853 (+) True kiaa0825
XM_039802845.1 mRNA downstream 168182 15943698 ~ 16099484 (+) False fam172a
XM_039802848.1 mRNA downstream 168182 15943698 ~ 16074345 (+) False fam172a
XM_039802849.1 mRNA downstream 168207 15943723 ~ 16099484 (+) False fam172a
XM_039802847.1 mRNA downstream 168759 15944275 ~ 16099484 (+) True fam172a
unassigned_transcript_261 other upstream 23489 15619073 ~ 15619144 (+) True trnac-gca_21
unassigned_transcript_260 other upstream 23818 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_259 other upstream 24677 15617885 ~ 15617956 (+) True trnac-gca_19
XR_005639522.1 other upstream 208190 15431708 ~ 15434443 (+) False zgc:101664
XR_005639607.1 other upstream 343990 15298542 ~ 15298643 (+) True LOC120561495
XR_005639530.1 other downstream 692807 16468323 ~ 16475897 (+) False LOC120560890
TU83070 other downstream 692851 16468367 ~ 16475905 (+) False LOC120560890
TU83072 other downstream 757813 16533329 ~ 16534149 (+) False LOC120560897
XR_005639579.1 other downstream 2223170 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 2555189 18330705 ~ 18331230 (+) True G62513

Expression Profile