RNA id: TU83396


Basic Information

Item Value
RNA id TU83396
length 203
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G62280
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17757855 ~ 17758057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcctaaagtgttccaagaaaacattccccacaccattacatcaccaccaccagcctgcccagtggtaacaaagcatgatggatccatgttctcattctgtttacgccaaattctgactctaccatctgaatgtctcaacagaaatcgagattCATCAGAcaaagcaacatttttacagtcttctactgtccaattttggtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83311 lncRNA upstream 185154 17568081 ~ 17572701 (+) False tmem167a
XR_005639496.1 lncRNA upstream 212947 17536842 ~ 17544908 (+) True LOC120560616
TU83301 lncRNA upstream 241758 17515654 ~ 17516097 (+) True G62217
TU83298 lncRNA upstream 264656 17492892 ~ 17493199 (+) True G62214
TU83297 lncRNA upstream 265126 17492390 ~ 17492729 (+) True G62213
TU83414 lncRNA downstream 55532 17813589 ~ 17813813 (+) True G62294
TU83482 lncRNA downstream 180970 17939027 ~ 17940846 (+) True G62344
TU83519 lncRNA downstream 257348 18015405 ~ 18017448 (+) False thbs4a
TU83529 lncRNA downstream 296742 18054799 ~ 18056149 (+) True G62372
TU83579 lncRNA downstream 369479 18127536 ~ 18127745 (+) True G62406
XM_039803296.1 mRNA upstream 21906 17733568 ~ 17735949 (+) True f2rl2
XM_039803298.1 mRNA upstream 42790 17712920 ~ 17715065 (+) True LOC120560621
XM_039803299.1 mRNA upstream 43027 17712920 ~ 17714828 (+) False LOC120560621
XM_039803300.1 mRNA upstream 45074 17710190 ~ 17712781 (+) True LOC120560622
XM_039803297.1 mRNA upstream 53649 17641543 ~ 17704206 (+) True si:ch211-130m23.3
XM_039804477.1 mRNA downstream 43388 17801445 ~ 17810258 (+) True poc5
XM_039804479.1 mRNA downstream 43388 17801445 ~ 17810258 (+) False poc5
XM_039804478.1 mRNA downstream 43506 17801563 ~ 17810258 (+) False poc5
XM_039803576.1 mRNA downstream 66990 17825047 ~ 17850025 (+) False LOC120560752
XM_039803575.1 mRNA downstream 66995 17825052 ~ 17850025 (+) False LOC120560752
TU83072 other upstream 1223706 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1281950 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1281958 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 1980714 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 2138711 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 240629 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 572648 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 649330 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 658071 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 903100 18661157 ~ 18681161 (+) False acacb

Expression Profile