RNA id: XM_039802082.1


Basic Information

Item Value
RNA id XM_039802082.1
length 1059
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120559997
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13945038 ~ 13961157 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGCAACAGCTGAGTGTATCTACAGTAACAGCCCTGCTGGTAAAATCAGCGTTTGGGTGTGGATCCATATTCACAGGAACATTACAAAATGGGACTTCATTCAAGATCTACACGTATGATTCCTCGGGGAGCCTGCTGAAAGACTTGAATGTCTGAATGAGAGCAGGAGGAAGCCTCAAGCAGAGTGTGCTGCAGGGGACAGCATGTATGTCCACAGCGTGCAGAAGAGGAACTTTCAGTCCAAACCCTTTTCAGAGAGCACAGTGTTCACTTTGCTTCCACCAAGACCCCGGTCCGATGGAGACACAGTGCTTTCCTCCAGAGGCTCGAAACTCCTGAGCCTGCAAGTACAGGGGTTCTGTTGTCCCCTACAGCAGAGGCCCAGCAGTGGGACGGTGACACGCAGGGTGACACCACCGagtagagagggaggagaggggagccTGACAATGTTAAGCAGTCTCAGAGGAAGGCTGGAGAGCAGAGGAAACCCAGCTTTAAGGTCCAGTACTGGGAGCAGACCTAAGAGGACTCCAGAAGGCGGACCTCCCACTGTATGCCATCCCAGAGAACCAGTCAGTAAAACAGCAGAAACTCCCACAACCCCCTGCGACAAAAAGAGGCAGGCTCGTCACGGTCATCCCGGCGCCACAAAGGTTTCCGAACTTCATCTGTATCTGCCTTTATCGATCTGTGACGATGAAGAGCAGGATGCTGAGACAGAGGAGATGAGGACTCCAGCAGAGGAGACTAGCGCTCCGGAATCCGAGGTCAATCCAAACAATGCAAACCATCTGGCGTTTACCCATCCTTCACACACCAGACAAGACCAACCTAACGCAGGACCCAGCACACCATCTGACAGCACAGCTGAGATGTCAAGTTGCTGAATCAGTGacttcttttaaatcacttcttaaaagacatttttataGACTTGCTTTCATGTGAtgctgtcttttaaaaaaatcttttcatcCTTTTGCCTTTTCTCTGTTCATAGCCACTTACTGACTGTTCTCCTATAACTTGATATTTCCACTTATCTTCGAATTtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639583.1 lncRNA upstream 39698 13904693 ~ 13905340 (+) True LOC120561318
XR_005639581.1 lncRNA upstream 40380 13903363 ~ 13904658 (+) True LOC120561317
XR_005639582.1 lncRNA upstream 40380 13903363 ~ 13904658 (+) False LOC120561317
XR_005639584.1 lncRNA upstream 119804 13812459 ~ 13825234 (+) False LOC120561319
TU82107 lncRNA upstream 130006 13812112 ~ 13815032 (+) True LOC120561319
TU82166 lncRNA downstream 99766 14060922 ~ 14061171 (+) True G61332
TU82211 lncRNA downstream 291100 14252256 ~ 14253343 (+) False LOC120560400
TU82212 lncRNA downstream 300999 14262155 ~ 14262869 (+) True G61376
TU82213 lncRNA downstream 318976 14280132 ~ 14281656 (+) False LOC120560400
TU82225 lncRNA downstream 364234 14325390 ~ 14327533 (+) True G61389
XM_039804375.1 mRNA upstream 42389 13869682 ~ 13902649 (+) True LOC120561313
XM_039804373.1 mRNA upstream 298688 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA upstream 299534 13567559 ~ 13645504 (+) False adgrd2
XM_039804576.1 mRNA upstream 578828 13349141 ~ 13366210 (+) False lhx2b
XM_039804110.1 mRNA downstream 25075 13986231 ~ 14000271 (+) True atad1a
XM_039804269.1 mRNA downstream 186414 14147570 ~ 14188917 (+) True piwil2
XM_039802181.1 mRNA downstream 237599 14198755 ~ 14211704 (+) False LOC120560074
XM_039802180.1 mRNA downstream 237602 14198758 ~ 14211702 (+) True LOC120560074
XM_039802182.1 mRNA downstream 238251 14199407 ~ 14211702 (+) False LOC120560074
TU81938 other upstream 1021202 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 1021202 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 2018437 11926183 ~ 11926601 (+) True G60897
XR_005639563.1 other upstream 3192598 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 146327 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 180286 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 322261 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 356383 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 356383 14317539 ~ 14319506 (+) False G61390

Expression Profile