RNA id: XM_039802550.1


Basic Information

Item Value
RNA id XM_039802550.1
length 2360
RNA type mRNA
GC content 0.49
exon number 14
gene id msi1b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14405140 ~ 14429432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTGCCCCGGTGTGGTGGGATGAGAGCGAGACCGCAGcgggactgactgactgactggaggaggaggaggtggagtctGTCCCAGCCTGCATCTGGCCCGCTCCCCTCTCTGTCACCACGGGCCAAACCCGCCCAGctcctctcactcactcactcactctccgCCTGTTCTCCCGCACGGCacggctcggctcggctcggaCACAACGCAGCACTCaactcacacaacacacacagcgagGACACGGAATGGAGACGGAAGGGAGCCAGAGCAGCCTGTCCACCACGGACTCCCCTCACGATCCCTgcaaAATGTTCATAGGTGGACTCAGCTGGCAAACAACACAAGAGGGCTTGAAGGAGTACTTCTGCAAGTACGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCGGTTACTAAGCGCTCGAGAGGGTTTGGATTCGTCACCTTTGTTGATCAGGCCGGCGTGGATAAAGTTTTGGCCCAAACCAGGCATGAATTGGACTCCAAAACAATCGACCCAAAGGTTGCATTCCCTCGCAGAGCTCAGCCCAAGTTAGTGACACGAACCAAGAAGATCTTTGTGGGAGGcctgtcagtgaacacaaccaTCGAGGACGTGAAACAGTACTTCGACCAGTTTGGGAAGGTCGACGATGCCATGCTCATGTTCGACAAGACCACCAACAGACACAGAGGGTTTGGCTTTGTGACGTTTGAGAACGAGGACGTGGTGGAGAAAGTCTGCGAGATCCACTTCCACGAGATCAACAACAAAATGGTGGAGTGTAAGAAAGCTCAGCCCAAGGAGGTGATGTCCCCCACAGGCTCAGCCAGGGGGCGCTCTCGCGTGATGCCCTATGGGATGGACGCCTTCATGCTGGGCATTGGTATGCTAGGTTACCCAGGCTTCCAGACAGCCACCTACACCAGTCGGAGCTATGCTGGCATCACTCCTGGATATACCTACCAGTTCCCTGCCATTCCTCTGACAGCATATGGACCAatggcagcagcagcggcggcagcagcagtagtTAGAGGCTCCAACCAGTCTCGCACAGCTGGGTTCTTAGGTACGAGCAGCCCGGGCCCGATGGCGGACCTTTATGGGACAGCCGCTCAGGAGTCGGCTGTCAGCAGTTACCTCAGCGCTGCAAGCCCCGCCCCAAGCACTGGATTCAGCCACAGTCTGGGGGGCCCTTTGATCGCCACGGCCTTCACTAACGGCTATCACTGAGAGCtgcagAGCTGTAGACTGCGAGCTGGAAGGAGTTGAAGCTGCTTTGGAGCTGATCTGGCCTGTCTCTGTCCAGTCCACCTCTCTGGCTGTGGCAGctgaacccccccccctcctccaaaCCCCACCCTGGTGTCAGCCTGAACCCAGCCCACCCTACTGACGCCTCCCTTAACTCCACctcctgagtaaaaaaaaaagaaaagaaaagaagaaaagggtCATAAAAGGAGCGAAAAAGTTTATCACCACATGTAATAGCCACACATACAGATGATGTATTTTTAGtgttttctgtttcttcttctgtcaTTTCaacttgctgttttttttgttgttgttttttgcgaTGGCTACGTTGGTTCTTTATCCATTTTGGCTGTGTTTTCTTGATCTCTGAACCTGATCTCtctgagagaaaaggagagaaatcTCCAGGTGAAGCTTGTTTGAAAGGTCAGGAGCTGTTACTGGAAAGCTGTATATGTCACTAGTTCATACTgaattttaacaaaacatttgtgattAATACTATTTCTTGAAAATGTGTCACAAAGTGTATATCTTGGTAGGTTTTTAACAAAGACTTGTAACACTAATAATGGTCTGACGACAAGGGGCATTAGTCACAGTTATGTAATAGGCCTACATGAGCTGtacaattttgtaaaatattgtaaatatgaCTGGTTTCTGGGAGGGGGGGCGGGGCTCAGCTAATGTTTGTGTGCGGGAGGCTTTTGGAGAAATAATACGATCGCTTCTTTCATCAATCCGTATGTGTTGGAAAGTTTGACTGTTACATATCATAGTTTCACATGGAGGTCGAGAACATTTCAGTATGTACATGCTGTATTCCTCTCCAGGCATTTTTATAAAGGACGTGTCATTTTGATTCTgttaatgcatttaaaaaaaaaaaacgagctgAAACGCTACAAGTTCCGCAGGAGAGAGGCTGAGGCTGGAACAACACTTTACCTTTGGGGATTGATGGGTGTGAAAATGCTCGTCTATcaggagaggaagaaaagaagaaaaaaaacatacggTTTTCTTACTTTGTCATATTGTTGTTTTAACTGTGATTTTCAATATGTGCTGATTGTTTGTGAAA

Function

GO:

id name namespace
GO:0007417 central nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82320 lncRNA upstream 968 14403633 ~ 14404172 (+) True G61450
TU82319 lncRNA upstream 2378 14402055 ~ 14402762 (+) True G61449
TU82318 lncRNA upstream 3259 14401231 ~ 14401881 (+) True G61448
TU82286 lncRNA upstream 36652 14365232 ~ 14368488 (+) True G61431
TU82228 lncRNA upstream 75393 14328180 ~ 14329747 (+) True G61391
XR_005639561.1 lncRNA downstream 35571 14465003 ~ 14465725 (+) True LOC120561034
XR_005639559.1 lncRNA downstream 39765 14469197 ~ 14472189 (+) True LOC120561032
TU82334 lncRNA downstream 39781 14469213 ~ 14472101 (+) False LOC120561032
XR_005639539.1 lncRNA downstream 68349 14497781 ~ 14499057 (+) True LOC120560938
XR_005639538.1 lncRNA downstream 68366 14497798 ~ 14499057 (+) False LOC120560938
XM_039802551.1 mRNA upstream 12557 14389471 ~ 14392583 (+) False c6h12orf43
XM_039802552.1 mRNA upstream 12557 14389564 ~ 14392583 (+) False c6h12orf43
XM_039802776.1 mRNA upstream 21913 14377254 ~ 14383227 (+) True unc119.1
XM_039802864.1 mRNA upstream 123369 14265347 ~ 14281771 (+) False LOC120560400
XM_039802863.1 mRNA upstream 123370 14252911 ~ 14281770 (+) True LOC120560400
XM_039803816.1 mRNA downstream 1956 14431388 ~ 14433300 (+) False LOC120560925
XM_039804211.1 mRNA downstream 8393 14437825 ~ 14445152 (+) False prkab1b
XM_039804210.1 mRNA downstream 8592 14438024 ~ 14445152 (+) True prkab1b
XM_039803999.1 mRNA downstream 21419 14450851 ~ 14454246 (+) True pla2g1b
XM_039803809.1 mRNA downstream 119247 14548679 ~ 14555480 (+) True cfap77
TU82315 other upstream 12562 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 85634 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 85634 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 121269 14283417 ~ 14283871 (+) True G61383
TU82172 other upstream 263090 14141442 ~ 14142050 (+) True G61338
TU82322 other downstream 1898 14431330 ~ 14434597 (+) True LOC120560925
TU82404 other downstream 326093 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 326093 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 345081 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 345082 14774514 ~ 14786109 (+) False surf4l

Expression Profile