RNA id: XM_039803109.1


Basic Information

Item Value
RNA id XM_039803109.1
length 3190
RNA type mRNA
GC content 0.48
exon number 18
gene id ddhd2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18345554 ~ 18357632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCATCGTTGTTTTAACCATGTATTTGTCCGTTAGTGTGGTCGTTCTTTAACGTCAATCTCGTAATAGTCATATTTCCGAAAACACTGTAACCAACCCGTTTGACAGAAGGCTGTCCTTGGCTAGCCGACCTAGTCCGAgcgagttagctagctagctagctaaacaaCGAAAACAAACCATGGATGTTTTACAAGACAATACAAACCCTCTGAATTAATTGTATGTAAAGTTGTCGGTGagtttagctagctaggctGACACTGTGTGTTTctaaagttagctagctagtgctaTATCCTATatccaaaacaacaacaggatGTGAAGAAAGAGAAGTTGGCACTAGCATCCCGTCCAGCCACCGTTACTAAAAGCTAGCGTTGACCTCAACCAACGATAACAACCCGTGGCCTCTTGGATGTGTTTGTTGCACTCTTTTAAAAAACACCGATAACATGAAAAATAACCGTTAACATTAACCTTAGTTAGTACTATTCAACGTAATGTCAAGAAATCCTTTACATCCTTTGTGCGACTTAACGGTTTGATGTCACATTAACCTGACTGTTTATGTTTTCCATTGCGTTAACAGTTAAACGTTTATTTACTGACCAGCAGCGGATGAGACAGCTGctagtaacgttacatcctaCGACCTGGTATTCCTAACGTTACATTAAACCACTCAACAACAGTTTGGTCTGGGTTGTTACAggtcctgtgtttgtgtggccCCGGCCACCGTCAGGGCAGAGCTGAGGGTTTGGGTCAGCTGTTGGGCTAATGTCACAGAGTCCTGGTGAGGAGGGGGGTCTACCTCAGGCTGCCCCTATCATCAACCTAGACAACCCCATCCAGACTGTGGCAACAGGGAACACACCTGAAGATCAGGCGTCACCTGTGGTTGATGAGGCCTCTCCTTCTTCCACGTTCTCCTTTGAGATGCTTGACATGGAGTCGTTCCCAGCTCCTTATCAAGAAGTGCAGCCTCACTGGTTCTTCTGTCGACGGAGCGATGACAACACCTCCTGGCTCCCTTTCAGCAGAGAAGACTCTGACAAACTAGAGAATGCCTGCAACACTGTAAAAGACGAGGAGGATGAGGTAGTGATAGCTGTGGAAGGAGAGCGGTATGACGTACATGTCAAGGAGAGGAAGCGCTATGCTGTGTACTGGGAGCAAGGCCCCACTGAAGTCCGCCGCTGTACCTGGTTCTATAAAGGAGACAAAGACACCATTTTCATGCCTTACCCTGAGGACTTCAGCAAGAGTCTGGAGGAGGCCTATATGATAGCAGTGACCTTGAATGAATGGAAGAGGAAACTGGAGTTTTCCAATGGAGAGACTGTCATCTTACACAATCCTAAGCTAATAATGCAGTATCAGCCAATAGGATTGCAAGATGATTGGGTGTCCTCCCCCTCGGAGCACACCCGGCCTCAAACAGTCAAGAGGGGAGTGGACAACATCTCTGTAGAAATACCtgatgGTGAACCGGAAAAGGTAGACCACCTTGTCTTTATGGTCCATGGCATCGGCCCTGCATGTGACTTGCGCTTCAGATCCATCATAcagtgtgTAAATGACTTCAGGAGTGCTTCCCTGTCCCTCCTGGCCTCTCATTATAAGCATGCTCAGCAGGATGGCCAGATAGGAAGAGTGGAGTTCCTCCCAGTCAACTGGCACAATGCTCTTCACGGTGATGCCACTGGTGTGGACGAGGACATCCAGAGGATCACTCTACCCAGCATCAGCAGGCTGAGACATTTCACCAACGACACTCTGCTGGACCTGTTTTTCTATAACAGCCCCACCTACTGCCAAACCATAGTGGACACAGTGGCCTCAGAGATCAACAAGCTCCACACCCTCTTTAAACAGAGACACTCAGAATTTAAAGGGGCAGTTTCAGTAGTGGGCCATAGCCTGGGTTCGCTGATCCTGTTTGAcctgctgaccaatcagaggacTGGATTAGAAGCCAGAGAGGGGGTGCCCTCTGGTGAGCCCTTTCGTCCTAACTGTGACACACTGCAGCAGACTCTGACCAGACTGGGCCTAGAGCAATACCTGGATACACTACAGGCAGAAAACCTAGACCTGGAATCactgGCTCTTTGCCAAGACAGTGATCTCAAAGATTTAGGAATTCCTCTTGGCCCTCGGAAGAAGATCCTGAACTATGTCAGGAGGAAATGGCTTTCAGAGGATTGTAAGAAAAGGGCCGGACGCCTGCCACCTGGGTTGCAAGTTCCACCTCAAGTGACCAGCGATCACGATGGTAACCAGTCTTCAGGATTAACGACGCAGCAGTCCCAGTTCCACAGGGCGCAGTCTGTCACCAGTGCTGTAGACTACGAATACTTTGACGTTGGCATTGGACAGACCAATGGAGGCATAGCCAAGGGACAGGTATCCATTGATTACCCACAGCTGGCTTTCCAACCTCAAACATTTTTTGCTTTTGGCTCTCCTATTGGAATGTTCCTGACCGTTCGTGGGCTCAAACACATCGATCCTAACTACACCTTCCCAACCTGCAAGAGCTTTTACAACATCTACCACCCGTATGACCCTGTGGCTTATCGGTTAGAGCCTATGATTGTAACAGAGGTGGATCTGGAGCCCATGCTGATCCCTCACCATAAAGGCCGCAAGAGAATGCACCTGGAACTAAAGGACAGCTTGACCCGTATGGGCATGGATTTGAAGAACAATGTTTGGGGATTGTTACGGACAGCATGTCAGTCCTTTGCCAGACCACCAGTTGCTGCACTGCCCTCGGTGGATGGAGACCCTACAATAAAGAGAGACCTTCAAGAGAgacacaCCTCAGCGGCAGTCACTGCTTCTGCTAAGAGGGAAGAGAAAAGTGCAGATTTTTGGACTAAAATACTGGAGTGGCCCAGGGCCCTTCATAAGCATTACTTCCAAGGTAAGCCAGGATAGTCActtcagggtttcccccagtgtattgcaagcctggTGGCTCACCGGGCCTTAGTTGCCCCAccaccaggcctaagccactgggaattattttttaatgtacttttaagacattttttaaactgcaagTTACAGTGGAGCGGCTCGGTTGGAAACGTAGACGTAGTCATACtgttttcaaatctccagttagcttttagcactgacttaatgtagggccctatggaatctgtgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83694 lncRNA upstream 24656 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 31037 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 48911 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA upstream 50508 18293260 ~ 18295306 (+) True G62484
TU83580 lncRNA upstream 216745 18128826 ~ 18129069 (+) False setbp1
TU83741 lncRNA downstream 11444 18365280 ~ 18388485 (+) True G62533
TU83734 lncRNA downstream 87526 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 103662 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 144127 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 144794 18498630 ~ 18498972 (+) True G62558
XM_039803094.1 mRNA upstream 17277 18326964 ~ 18328537 (+) True srrd
XM_039803095.1 mRNA upstream 17277 18326964 ~ 18328537 (+) False srrd
XM_039803089.1 mRNA upstream 34181 18306898 ~ 18311633 (+) True LOC120560506
XM_039803088.1 mRNA upstream 58532 18282370 ~ 18287282 (+) True akr1a1a
XM_039804345.1 mRNA upstream 65702 18270720 ~ 18280112 (+) True dnajb5
XM_039803520.1 mRNA downstream 11909 18365745 ~ 18382595 (+) True LOC120560725
XM_039803603.1 mRNA downstream 29113 18382949 ~ 18386253 (+) True si:ch211-113d22.2
XM_039803604.1 mRNA downstream 29116 18382952 ~ 18386253 (+) False si:ch211-113d22.2
XM_039803605.1 mRNA downstream 35275 18389111 ~ 18400741 (+) True si:ch211-204d2.4
XM_039803606.1 mRNA downstream 35275 18389111 ~ 18400741 (+) False si:ch211-204d2.4
TU83701 other upstream 14584 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 336496 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1811665 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1869909 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1869917 16468323 ~ 16475897 (+) False LOC120560890
TU83742 other downstream 53551 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 62292 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 307321 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1081071 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2123976 20477812 ~ 20488838 (+) False wdr31

Expression Profile