RNA id: XM_039803708.1


Basic Information

Item Value
RNA id XM_039803708.1
length 1456
RNA type mRNA
GC content 0.47
exon number 10
gene id mak16
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15298400 ~ 15306100 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGACGTCACGACTCGGAGATCTAGCCCGTGCAAACAGAAATGGTGGCTCCCTGACCCACCGTCCATGTGGCTTCGTAGACAGAAAAACTCCTTCATAACTtcatatttacttatttaatatAATTATAACAAACAATAGTCTGGTTGGGTGAAGCTgcaagcagctctgtgaggaaGTAAAGATGCAACACGACGACGTGATCTGGGACATTATTGGAAACAAACAGTTCTGCTCCTTCAAAGTCAAGACGAAGAGTCAGGGCTTCTGTCGTAATGAATACAATGTCACAGGGTTGTGTAACCGCTCGTCCTGTCCGCTGGCCAACAGTCAGTACGCCACCATCAGAGAGGAGAAAGgtcagtgtttcctctacatGAAGGTGATCGAGAGAGCAGCTTTTCCTGCCAAGATGTGGGAGAAGgtGAAGCTCAGTAAGAACTACGAGAAAGCTCTGGAACAGATTGATGAGAATTTGATCTACTGGCCTCGATTCATCCGACACAAATGCAAACAACGTTTCACAAAAATCACTCAGTACCTGATCCGCATGCGCAAACTGGTCCTCAAGAGACAGAGGAAGTTGGTTCCTCTCAGCAGGaaggtggagaggagagagaagaggaaagagGAGAAAGCTCTGATCGCCGCTCAGCTGGATAACGCCATCGAGAAGGAGCTTCTGGAAAGACTCAAACAGGGAACGTACGGAGACATCTACAACTTCCCAGTCCACGCCTTCGACAAAGCTctggagcagcaggacgcagaGAGCGAgtctgaggaggaggaagagggggaggaggaggaggaggaggaggaagaagatgatgagGACACTGGGAAGAGAGAGTTTGTAGCAGACGACGAAGTGGATGAGAGCGACCTGAGCGATTTTGAGGACATGAACAAACTGAAGACAAGCAGCGATGAGGAGGAACAGGACGAGGAAGAGGAGTccagtgaggaggaggaggaggaggaagtggagacaaAGACGAAGGCCTCTAAGTCTAAAGGCAAATCTCCAGCCAACGGCTCAGCGGCGAGGAAGAAGCGAGCATACGTAGAGATCGAGTACGAGACAGAGCCCGTCGCCAAGAGCAGAGCCACGTCGTGATGTCACACCCTGTGCTGAGGACACACCCCCTCCACGGTGGTCATCAGTTTGTTCGTACAGAGACTGTAAATGGAAGTTTGTTTGTTAATGGACACACAGGACGGATCTGACCTGGAATCAGATCTGATTAAAACACCCAAAGTGACTTTAACGCTTTGTCTGCTTAACAGTGACTTTAAAAAtaactttgtttgttttgttaaatattGAGTCCAGAATCCTCTTTGAAAACAAAGTAACAGGTGATGAACATGACAATAAATCAAttttggaagaaaacaaactgtaaacCTGCTTTATACGTTCATATTAAACAATGACATTTGGAGAAAAATA

Function

GO: NA

KEGG:

id description
K14831 MAK16; protein MAK16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82733 lncRNA upstream 57793 15240416 ~ 15241442 (+) True G61757
TU82730 lncRNA upstream 74266 15224547 ~ 15224969 (+) True G61754
TU82732 lncRNA upstream 74770 15224114 ~ 15224465 (+) True G61756
TU82731 lncRNA upstream 75220 15223122 ~ 15224015 (+) False nudt18
TU82698 lncRNA upstream 146684 15146100 ~ 15152551 (+) True G61730
TU82749 lncRNA downstream 347 15306447 ~ 15314578 (+) True G61770
TU82761 lncRNA downstream 68677 15374777 ~ 15376002 (+) True G61782
TU82867 lncRNA downstream 226008 15532108 ~ 15532796 (+) False LOC120560526
TU82871 lncRNA downstream 226767 15532867 ~ 15572973 (+) True G61867
XR_005639523.1 lncRNA downstream 233255 15539355 ~ 15539844 (+) True LOC120560847
XM_039803705.1 mRNA upstream 3008 15281965 ~ 15296227 (+) True spinb
XM_039803702.1 mRNA upstream 46896 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA upstream 46896 15242850 ~ 15252339 (+) False lrrc2
XM_039803124.1 mRNA upstream 75569 15219137 ~ 15223666 (+) True nudt18
XM_039803151.1 mRNA upstream 317618 14980789 ~ 14981617 (+) False LOC120560530
XM_039803723.1 mRNA downstream 110356 15416456 ~ 15430582 (+) True LOC120560841
XM_039803724.1 mRNA downstream 125608 15431708 ~ 15434935 (+) True zgc:101664
XM_039803725.1 mRNA downstream 129641 15435741 ~ 15467408 (+) True LOC120560844
XM_039803726.1 mRNA downstream 145953 15452053 ~ 15467408 (+) False LOC120560844
XM_039803140.1 mRNA downstream 202822 15508922 ~ 15520405 (+) True LOC120560525
XR_005639607.1 other upstream 592 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 215787 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 348614 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 504633 14786011 ~ 14794602 (+) False G61514
XR_005639548.1 other upstream 513126 14774544 ~ 14786109 (+) False surf4l
XR_005639522.1 other downstream 125608 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 311785 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 312644 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 312973 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 457014 15763114 ~ 15777141 (+) True mctp1a

Expression Profile