RNA id: XR_005639552.1


Basic Information

Item Value
RNA id XR_005639552.1
length 2137
RNA type transcript
GC content 0.49
exon number 13
gene id surf4l
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14774513 ~ 14795943 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctgccagcagggggcgacagaGCAGCTCCGAGACAAACCGTGAATAAGTctgtgtttacatgtagccgaGCTAGCTTTAGCTTCTGCCGAGCGGTACGTTTAACTAAATTCAACtgcatttaaattaaatatacgTATTTACTCTGATAAGAGCTCTTCCTCTGCCAAACAACACAGGGACTTGAAACACTAAAGCCAGACTCTGTTTGTTGGTCGAAGCCGCTTTATCCCGTTAACGTTAGCCAAACCACGGACGGTGCGATATTTCTTTTAGAAATCGGCGAATTTAAAGTTCGTCTGCTTATCAATCGAGTACAGTCCCTTATAATAATTAGGCTAAGACATGTTACTAATTAACATTAGACAGGTGTATATTCGGCTTACATACTAAGCACAAGTCACTTCTTATTCATTATACTTTTGTGTTTACGTAAGAATTGAGACATTTTTAGGATCTTGGCAGAGGATCAATGACGATATCTGCCTATACGTTTTATTTTTCAACGTAGTTCTTTGTAAACGAAACGAAATCTTAATTAAGCTGTTGAGTACTCTTCTATCAGCGCAGGTCAGTTTTGGTGCAGATAAAGGTCAACTGGTTTTCAACATGGTCAAAACTCAGCGGAGAACAGACAGGTGTTTTGTACCTGCTGCAGGGAACAGTGTGACGTGGGTTCGTTTTCCTGTTGGCCCCGTACACAGGAGACACCTTCAGCAGGTAGACAGAAACAATCCCCACAGCTCCATCACCACAGAAGAAGAGAGACGAGACCCAGGAGGACCTGACGAAGGTTcaggagagacaaagagggcGAGACTGGACCGAACTGAAGAGGCTGCAGCTCTGACCAGTAGAGAGAGAGTCCCAGGGTCATGCGGTCAACCAGGAAGTGAGAGCTGCTGCACAGCAGatGGCGTTTCATCCAGACTGCCTCCTCCAGACCAGCCGGCGTCAGCAGAGCCCAGTGAGGACAGCAGAGCAGCTGAGctgcaGAGTGTGAGTTCACTAAAGGTCACCATCCAGCAGAGCAGTGAGAGCAGAGAGttcggacagacagacaggacagctgacagacagacaggtggactCCACTGTCACGTCTGTGACCTCACCTGTCGCTCTGCGCAGgtgtTTCAGGAACACATGGCAGGATCAGAACACCTGAGGAAACTGAAGGAGATGACACACTCTATCtgcctcaacacacacacactgcagaacagGGGGTGTTTGCCTGAACCGCAGCGTTGGTGTGACACCTGTCAGACTCACTTCAGCGgtgatatcatcgtccatcgacggacaaaacaacacaagatgtgtaaGCAGATGTGTCGTCCCTTCTGTCCGGTGTGTAAACGTCACTTTAGGACTCCCAGGAAGTTTGTGGAGCACATGAAGTCTGCAGAGCACAAGGAGCAGGTGCACCTGGAGGAGGCTCAGGAGGAAGAGCTGATCACAGTGGACGCTGTCGGCTGCTTCgagggagaggaggatgatgaAGAAAAGGAGGTAGAAGAAGTAGAAGtagctgaagaagaagaagaagaagaagaagagagagtgtAGGAAAGGAAGAAGCAGAGAAGGTGTCGGAGgcagcagacacacagaaaacagaccAGGAGGAATATGACCCCCACACCACATACGGAAGTGGTTTTGTGCTTCCTGTTTCTGGCTTCCTGTGTCAACTGTGTAATAAGTTCTTCTACAGAGAGACAACAGcacgacacacacactgcaggacGCACACGCACTACGTCAACctgcagagccACAGAGCTAAGAGAACACATGAAGATCAGGACAGATCTGCTCTCACCTGACCTACTGTCATTGTATCCCACAATGCATCTCTGTATCCAGGTGATACTGCTGTAAAGACACAGAACAGGCATGTTCTCCCAAAATAATGTGAACATTAAACAGGCACTCTCCGTACACGTGGCATGCCTCACCCTGTCGGTCCAGAGGGGGCGCTGTCCCCGCTGAACGCAGAGGATTGTGGGATCGCAGGAGGCAGTAGCggagcatcatcatcatcatcactgccGTACCGCGGGACTCGTCTCACCGGACTTTAACCTGAGCTGGGAGCCGTTTCTCCGCACTTAAGTGCCTTAACAGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639594.1 lncRNA upstream 12048 14755450 ~ 14762495 (+) True LOC120561401
TU82398 lncRNA upstream 20487 14699525 ~ 14754056 (+) True G61514
TU82392 lncRNA upstream 97171 14676137 ~ 14677372 (+) True G61513
TU82340 lncRNA upstream 275109 14499180 ~ 14499434 (+) True G61468
XR_005639540.1 lncRNA upstream 275486 14497838 ~ 14499057 (+) False LOC120560938
TU82458 lncRNA downstream 240332 15026441 ~ 15027400 (+) True G61539
TU82459 lncRNA downstream 241496 15027605 ~ 15027818 (+) True G61540
TU82698 lncRNA downstream 359991 15146100 ~ 15152551 (+) True G61730
TU82731 lncRNA downstream 437013 15223122 ~ 15224015 (+) False nudt18
TU82732 lncRNA downstream 438005 15224114 ~ 15224465 (+) True G61756
XM_039804510.1 mRNA upstream 2391 14767716 ~ 14772152 (+) True kazald3
XM_039802857.1 mRNA upstream 21143 14677671 ~ 14753400 (+) True grin1b
XM_039802194.1 mRNA downstream 55962 14842071 ~ 14867655 (+) True LOC120560087
XM_039802198.1 mRNA downstream 55962 14842071 ~ 14867655 (+) False LOC120560087
XM_039802196.1 mRNA downstream 55962 14842071 ~ 14867655 (+) False LOC120560087
XM_039802195.1 mRNA downstream 55962 14842071 ~ 14867655 (+) False LOC120560087
XM_039802197.1 mRNA downstream 55962 14842071 ~ 14867655 (+) False LOC120560087
TU82405 other upstream 11994 14755525 ~ 14762549 (+) False LOC120561401
TU82404 other upstream 12054 14755525 ~ 14762489 (+) False LOC120561401
TU82322 other upstream 339946 14431330 ~ 14434597 (+) True LOC120560925
TU82315 other upstream 381965 14389603 ~ 14392578 (+) True c6h12orf43
TU82227 other upstream 455037 14317539 ~ 14319506 (+) False G61390
TU82426 other downstream 153284 14939393 ~ 14950621 (+) False cntrl
TU82454 other downstream 292765 15078874 ~ 15083448 (+) True G61535
XR_005639607.1 other downstream 512433 15298542 ~ 15298643 (+) True LOC120561495
XR_005639522.1 other downstream 645599 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 831776 15617885 ~ 15617956 (+) True trnac-gca_19

Expression Profile