RNA id: XR_005639562.1


Basic Information

Item Value
RNA id XR_005639562.1
length 5297
RNA type transcript
GC content 0.47
exon number 13
gene id LOC120561142
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10726438 ~ 10746953 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagaaaacactgttcacaaactgctcccaacagctctattgtagtgaAGCCTTTTCTTCGTGACGAGCTGACGTCAGCTCGTAACAGAAGTTATAaagctcgcctagctgctaagCTCCcctccccaccaccaccactaatTCAAGTTTGTTAGACCCAGAGCGGCTGGAGAGTTGAGAGTCTCGGTCATGTCCAGGAGACGCTGTATTCGTCAGTGCACGGggaaatttcctttttttcgtCTTCCGAAAGACGATGAATTTAAGAGTCAGTGgttaaaatttgtttttggcACTATTCCCCAGGACTACAACCCCAACCTTGTGTTGTGTTCTGTCCATTTTACGGAGGACTGCTTCCTGAACCTGCAACAGTTCAATTCAGGATTTTCAAACCGTTTAATTCTGAAAGACCGTGCAGTTCCGACTCTGTCTGGCCATCCTGGAGATTCAGAACCACAACCTAGTACATCACAGCAGCACCTCGAAACCCTACACCTTTCCACTACATTCCATGACATAGGATGCCAGACCGAACCACCACAAAATATGTCAGTGGGCATACAGTCCAGTGCTCCAAAAATGAGAACAGTCGGCACACAGCTATCCATGGgCACCCAGGCAATGGTGCCCTGTGTTAGTGTTTACACTGAGACCACTTCAAGCTCCCCAGAATTCACCCCGATGTCTTCAACACCAATAAGACCCAAAGATTACAGACCTCGCAAGAGACCTCGTCTTGagttggaggaggaggaagagggagacacCTCAACAGAGTTGCAAGCTGAGCCACAAGACTCAACATATATCCCTGGTGACTGTTCTAACGGATGAATCTGCCATGTCgtctGAGCCAGTGTCTACTTATAAGGATGATAAGTACATTGTTTTTGAAAGTTGCCTAAGGGAGCTTTTTCAAAGCTGTCCTGTATGCAAGAGGCAGTGTGACGTTCAGCGCCGAAAAATGGGAACGTATGTGTCATTCACACAGCTCTGCCCACACTGCAACTATTCAAGACAGTGGCAGAGTCGGCCTGTTGTAGGAAGTACAACCTACACCTGTCAGCAACCTAcacctgtcagcggcaacataTTTCACCGGTTCATCCTTCATCCAACTGGAAAAGATATGCAAGGCCATGAATCTTCAGATTTTCCAATATGACACCTTCAGGAGGCATGCTAGGAGTTTTCTGGAGCCAGCCATAATCCACAAATGGAAGACGGATCAGCAACATCTTTTTCAAAAGTTACAGCATGGAGGAAAGATTGGAGTCAGTGGAGATATGCGAGCTGACTCCCCGGGGCACTCAGCAAAGTATGGGAGCTACACACTGATGCACCTAGACAGTAACCACATTATTGACCTTCAGCTTGTTCAGAGCAATGAAGTAGGTGGTAGTTACCACATGGAGAAGGAGGGTCTTAAACGCTGCCTGGATCTACTGGATTCAAACGGTTTGGTGGTGGACTACATTGTCACCGACCGTCATCCACAGATCCAGAAGTATCTGAGGGAGCGCAGCATCACCCACTTCTATGATGTGTGGCACTTTGAGAAAGGTTTGTCAAAGAAACTTGACAAAGTTGCGCAAAACAAGGACTGTAGGGTGTTGAAGAAGTGGCTGCGTAGCATCAAAAGCCATGTCTACTGGAGTGCAACATCGTCAACATCAGGGCCAGAGAAGGTAGCCAAGTGGATGTCGATTGTCAACCACATCCAGAACGTGCACTTGTATGAAAACCCTCTTTTCCCTAAGTGCCAACATCCTGATTGAGTGTCAAGGGATCCAAGTAAATGGTTTCAACCAGgGTCAATGGCGCTCtacaaagtggaaaaaaatcCTGGTCAACAAGAGGGTTGTCAAAGATGTGGAGAAGCTGAGCCACCACTACCAAACATCATCCCTGGAGGCTTTCCACAGTTTGATCCTTCGCTTCACACCCAAGAATGTGGTTTTCCCTTTCATGGGCATGCTTTGCAGGTTGTACCTTGCAGCCATGCACTACAATGAAAATGCAGACCGTGAGCAAGCCACAacatctgcaggacaaccagtATTCAAGGTTGTGTTTCCCAAGTCCAGGAAATGGGAGGTGACTGCGAGGCCAGTAAAAACAGACCCTACATACACCAGTTCGGGTTACATGGCTCCCTTGACCTGGAGTGGAGCTTGAGGTCCGCCCCAGTATGCCATTACTCGTGGACAGCTAGAATTCCTCATCTCATGTGGATTCAGACCATCGCAGATGGCGGgaattttaaatgtttctctGAAAACCGTGAAACGGCGCTTAAGacgCTTCAATCTTTCTCGCTCCACCTCCTATTCGGACGTAACAGACGTCAACCTGGACGCCATGATTCGGGATCTGGCAGGAGGGAATGAACAACTTGGACCAGAGTTGGTCCGTGCCCAATTGAGGGCAGAGGGTGTCCGAATCCAGAGAAGGAGAGTGAGGGAGAGTATGGTACGAATCAACCCAAGAGTGGCTGCCCTTCGTGCGATGTCACAGAGGCTGCACAGAAGGTCTTACCGGGTGGCGGGACCAAATTCTCTGTGGCACATCGATGGGAATCATAAACTGATAAGAGTTTGAAAACCGTGGATTCAATTCTGGACATTCCACCCCCATATCTGTCCAAACCCGCCGCACGAAAGAAGAGAGCAGCCACGGTACCGACGACCCGACAGACGAGAGGCGATCGGGCACGGGAACAGCTCATCTCACTCCTCCGCCACACTGATGCAGCCGCGACCGCTGGATTGCCAGTATTACAAGGCCTCACAGAGGAAACTGAGGAGGATGAAGCTGATGCATTCCCGATGATTCAAGTCCCTACACAAGCAGGGGGAATAGGCCTGGTGTATAGGGCTTGGACTGAATTAGACATTAGGAAAGCCACAAGCCACCTTCCCCCGTGCAAAAACTCTTTTCTGCCCACTGTTCCAGAAATACGACGCCTTCTGATGATAAACCTGGGGCCTATGGAGTATGCAAAGATCCGACACCTTCTCCCCGAAGACCCGACCGATGATCCAGTCCTCCACCATCCAAATCTTGCAAATAGAGCAAATGATGACTACAATGACCTGCTGGAGGACCTCTCCTCCGGCATAGAAACAGTGTTTCCAGATAGAATCGACATGTCACATGTGGCAAACACCAAGCAGAATAAAGGCGAGACGGTGGAGGACTGTCTGAGACTTTTGATAGACACAGCGGCATTGCTCGCACCACTGCCGCCGGAGCAGTGGTTGAACTTTGGGAagctcatttcaaaaacgtgttTTTGAGTGGGCTGCTCCCTGACATTCGAGCTGAAGTGGACAAGACCTGCATTGGACTGCCCGATTCAGCTCTGATGGAGATTGTTAGACATTCTGAGAAAATCCTGACCAGCAGAAGAGACAAGacggagaagaaaagacaacAGAACAGTGATGCTGCACAGTTAACCCTCATAAAAACTGTGGCAGCAATGTTTCAAGAAAGAAAGGGTGTGGGCAGAGGAAAAGGCAGAGGAAACAGAGGCAGGGGCCGTGGCAACATTCCGGTAGTGGATAAAGACACTTGCTACAACTGTGGCGAGAGAGCATTGGGCCTATGAATGTCCCCACCCCAAGAAGGACTCGTCTAAGGGACAGCGCAACGACCCTCAGCAGTTTGCAGATTGACAGGCGGTGGGGGATGGAGCTGGGTGTGGAATGGACAGACAGGACGACACGATTGCGTCTGTTGAGGAGggtaacatgcacacacacacagatacacatgcttgcaatgaagacatgctttCCTGCATACCACAAACACCTACACCTCCCCCTAACGATAGGCAAAACATATTAGATGCAATACAGCATATAGAACAGAAGGAATTGGCAGAGAATATGCCTATTTATGCTATGTATTCATCAGATGTGTATAAAAAACAGTGTTGACAATACAGGGGAGGGAAATAGAATTCTTGGTTGATTCAGGGGCTACAAATTCAGTTTTGAAAAAATCATTGTTTCCTAAACAAAAACTTTCTGGTAGAGTAATTCTTTCTCGAAGTGCGAGTGGTATGGTATTGCCAGAAAAATTTACTGCTCCAATGACTTGTGTGCACACAGATCCTACAGATCCAGACCCAGATAGAAGAGCAAAATGCTCATTTTTGCTCTCACCTGTGTGCCCTGTAAATTTATTAGGCAgtgatgtgtgtttttggtatAGGGGTAATTCCTGGCCTCAGGGTTGTGCGTTTTGataaaaatcatcttttttCCTGACATGTTTTCGTTAAAATCGAAAAGCACACACTCTTTCACATTTCTATGGGACATTAACCTTTGTCAGGCTATCGACCTCCTGACAGAAGCACAACAACTAGTGTCACCATTAGCAGTGCTAAGAACACCACAACAAATGCATTGTATCTCTCTTGTCTCCCCAACTCCAGACGAAGAATATGTTGACAAATTCCTTGACCAGTCCAAGGACGAGCTTGAGTTGTCTTCCGTCTACTGGCACACGTGCGCAGTGACGGTAGCCTTGACTGATAAACAGAAAGTTCTTCAGAATTCCTAACTCTGTAGCtcatatttttctctctttgtctccaacagaCCAGGGGACAGACCCAGGACACTTTGTCATGACCTGTGAGAAactgactgactggactgacacGGCTGATGACTGTATTTCATATTCTCCCTCAACAGGAAATTATAGAAAACTTTTATCATGGCACATGCCCTGTATCCGCAGTATCTATATATTGAGTGAAACTGCGCCTACAACAGACACATTTTTGCACGGTAAAAACGACATTTTACCTACAGACGTCTCACCACTTTTAGCCAAAGTGCCAACACACCTTTGGGCGACACACAAATATGACGTGGGGTTGATTAAAAACTGTCAACCTGTCGTCATAATACCACGTTCGGACTATAGACCACAGAAACATCAGTATCCGTTAAAACAGGAAGCTATTGATGGAATCCGACCCGTTTTTAACTCCTTATTGGCTACAGGAGTTATAATTCCGTGTCCAGATTCTCCTGTTAGAACACAGATTTTTCCTGTAAAGAAAATACGGCCAAAAGGCATTCCGACGGAATGGCGTTTCGTCCAGGACTTGAAAGCTGTCAATGCAGCTGTTCATGCGCGCGCACCAAATGTGCCAAATCCATACACAATCCTACAGggaattaattcaattcaattttatttatagtatcaaatcataacataagttatctcgagacactttacagatagagtaggtctagaccac

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81251 lncRNA upstream 21753 10686683 ~ 10704693 (+) True G60566
XR_005639494.1 lncRNA upstream 23012 10702631 ~ 10703434 (+) True LOC120560597
XR_005639493.1 lncRNA upstream 23929 10701819 ~ 10702517 (+) True LOC120560596
TU81216 lncRNA upstream 157560 10568306 ~ 10568886 (+) True G60533
TU81152 lncRNA upstream 359722 10354292 ~ 10366724 (+) True G60479
TU81262 lncRNA downstream 23598 10770546 ~ 10770824 (+) True G60577
TU81296 lncRNA downstream 65831 10812779 ~ 10814069 (+) False G60607
TU81298 lncRNA downstream 65831 10812779 ~ 10852906 (+) True G60607
TU81299 lncRNA downstream 67615 10814563 ~ 10840317 (+) True G60608
TU81312 lncRNA downstream 155113 10902061 ~ 10905629 (+) True G60620
XM_039803877.1 mRNA upstream 745392 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA upstream 745392 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA upstream 745392 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA upstream 756541 9927049 ~ 9969905 (+) False LOC120560959
XM_039803070.1 mRNA upstream 1350700 9368199 ~ 9375746 (+) True LOC120560494
XM_039804113.1 mRNA downstream 1169 10748117 ~ 10752440 (+) False LOC120561144
XM_039802043.1 mRNA downstream 426071 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 426126 11173074 ~ 11188211 (+) False marveld2b
XM_039802042.1 mRNA downstream 426839 11173787 ~ 11188211 (+) True marveld2b
XM_039804537.1 mRNA downstream 446539 11193487 ~ 11206112 (+) True oclnb
XR_005639542.1 other upstream 745392 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other upstream 745392 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other upstream 745457 9927107 ~ 9980989 (+) False LOC120560959
TU81099 other upstream 773207 9926950 ~ 9953239 (+) False LOC120560959
unassigned_transcript_251 other upstream 1513133 9213242 ~ 9213313 (+) True trnaq-cug_4
XR_005639564.1 other downstream 1168 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other downstream 1168 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other downstream 1168 10748116 ~ 10752440 (+) False LOC120561144
TU81647 other downstream 1179235 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 2174199 12921147 ~ 12923836 (+) False G61139

Expression Profile