RNA id: XM_039804269.1


Basic Information

Item Value
RNA id XM_039804269.1
length 3802
RNA type mRNA
GC content 0.48
exon number 24
gene id piwil2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14147570 ~ 14188917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATACCGTCTATCAACCACTTAAGTCCAGTATCAGGTGGATTCATTTAGTACAGACGTTAAGCGGCTCTGGTTAGGAATAATTGGACCCCTCGTGCCAGTCAACCCATTTTGTGTCAACTGGTTATAAAAAGAACTTGACCAAATGGATCAAAAGAAACCACCTGATCTTGGTAGTATGTCGAGCATGCCTTGGCTGGGACGCAGAGGAGGACTACAGCCTCAGGACCCAGCTGTAGGGCGCAGTAGAGGGCTGCTGCTCTCTCCCGAAGGGCCTAATATAGGACGAGCCAGAGGTTTCCCCACTCTTGGCGATACCCCACAAGGGCGGGGAGTAACTCTACCCATTACGGAACCAGTGGTTGGCCGAGCCAGAGGGCTGCTCTTCCCAGCAGCTGAACCAAAGGTAGGGGTGGCAGGAGGTGCAATCATGCCTAGCCTGGAGACGCAGCACAGACCGATGGCTCCACATGAAACCCAGACGCAGCACCAAACAGTAGAGACCTCTGCTTCAACAACAAAAGAGGTTGACCTGCCTACCTTTGGTCAAAGATCATCACTGGTCTCAATGTTCAGGGGAATGGGCATTGAGCCATCAATGACCTTGTGGGGAAGAGGAACACCACCAGTagGAAGAGGAGCAGCTGGAGATTTGGGTGATGCAAAGCTGCAAGACACCCCCGTAGGTGTCATCAGCAGCCCAGAAAGCTTCAGCCAACTTGAAGAGGTTATGGGCAGAGGCATCAGTTTCCATGGCCGAGGTTTGTCCCCTCAGACGATGGTAGGGCTTGGAAGAGCAGCGATGCCTCACCTTGGAATAGGAAGAGCACGCCTGCTACCTCTTTCTCCTGGTCATGTTGAGTCTGTTTCTGAAGCCTGTGAGCAACAAGCAGTCCTACACACTCGGACTCCCCCCTCAGGAACTGTGCCCCTGTTGCCCACCCCTCAAGAGGTGATTGAGCTTTCTGCTGTTGCACCAGCAAAGATGGAGCTGAAAATGGAGGCAGTCCGTGAGCCAACTAATAAGGCTGGAACAAAAGGAGCTCTTATAAATATTGGCTCAAACCACATCACGATTCGTTGCAAGAATGAAGCTGTTTATCAGTACCATGTTACATTCACtccaaatgttgaatCAATGGCAATGCGTTTTGGCATGATGAAAGATCACCGTTCAGCGACAGGGGAAGTAATAGCTTTCGATGGCTCTATACTCTTTCTGCCTGTTAAACTGAAAGACGTGGTTGTTCTCAAGAGTGTGAGACGAACCGATAACGaggaaatacaaatacaaatccaGATGACAAAGATTTTGCCACCTAACTCGGATCTATGCATTCCATTCTACAATGTGGTGCTCAGgagggTAATGAAAATCATCGGGCTGAAGCTGGTGGGTCGAAATCATTATGATCCAGAAAGCGCGGTCATTCTTGGAAAACATCGGCTGCAAGTGTGGCCAGGTTATTCAACCGGAATCAAGCGCGCAGATGGAGGCCTGTACCTGAATGTGGATGTGTCTCACAAAGTCCTGCGGAATGACTCTGTGCTGAATATCATGAACATGCTGTATCAACAGAGCAAAGAGAACTTCAGAGACGAATGCACCAAAGAGCTCATCGGCAGCATCGTCATCACCCGCTACAACAACCGCACCTACCGCATTGATGCCATTGAGTGGAACAAGTCACCCAAAGACACCTTCACTTTGATGGATGGCACAGAAACCACCTTTGTTGAATACTACAGcaagAACTATGGGATTACCATCAAAGAGATGGACCAACCTCTACTCATGCATCGGCCAAAGGAGAGGGCTAAGCCAGGAGGGAAGCAAATCATTACTGGAGAGATCCTTCTAGTACCAGAGCTTTCCTTCATGACAGGAATCCCAGACAAAATGAGGAAGGACTTCAGAGCTATGAAGGACCTGACCATGCACATCAACGTGAGCGGTGAGCAGCACACCCACTCAATAAAACAGCTTCTGAAGAACATCAGCACTAACCCTGAGAGTCAGATGGAGCTCAGCCGATGGGGACTGGACGTTGACTCAGAAATCCTGATGACTAAAGGTAGAATTCTTCCTCTAGAAACCATATGTCTACAGTCAACATCCTTTACCACTGGCACTGATGTTTCCTGGTCCAGAGAGGTTGTTAGGGATCCTTCAATCAGCTCTGTCACATTGAACACCTGGTCCATCTTCTACCCTCGCCGCTGTGCAGAGCAGGCTGAAGAGCTGGTTTCCATCTTCAACAAGGTGGCGGGACCTATTGGGTTTCGACTGCAGCGACCCATTCGTGTGGAGCTGAAGGATGATCGCACTGAGACTTACGTCAAGAGCATCCACTCTCAGCTGACCAGTGAGCCCAAGATGCAGCTCGTAGTGTGCATCCTGGTCGGCAACAGAGAAGATCTCTACAGTGCCATCAAGAAGCTCTGCTGTGTCAAAAGTCCCATACCATCCCAGGCCATCAATGTCCGCACCATATCCCAGCCACAGAAGTTAAGAAGTGTTGCCCAAAAGATACTCCTGCAGATAAACAGCAAGTTAGGAGGAGAGCTATGGACTGTCAATGTCCCTCTGAAACACTTGATGGTGGTGGGAGTTGATGTCCACCATGACACCAGCAAGGCACATCAATCAGTCATGGGCTTTGTCGCCAGTGTGAACAGTTCACTGACCCGCTGGTACTCCAGAGTAACTTTCCAGACACCCACTGAGGAACTGATCAATGGCTTCAGAGTTTGTTTACTGGCTGCACTGCAGAAGTACTACGAGGTGAACCATAACTTGCCAGAGAAGATCGTGGTGTATCGGGATGGTGTGTCAGATGGTCAGCTAAAGATGGTGGAGCAGTACGAGATCCCACAGTTGATCAAATGCTTTGAGACTTTCCCCAGCTACGAGCCCAAGCTGGTCTTCATTGTGGTCCAAAAGCGCATCAGCACCACCCTCTACTCATTTGCTGCAAACAACATTGGCACACCTCCACCTGGAACTGTTCTGGATCACACCCTTACTCAGCAAGACTGGAcggatttctttttaatggcacaTTCCATTCGCCAGGGCTGTGGAATTCCGACACACTACATCTCCCTGTACAACACGGCAAACCTCTCACCAGACCATTTGCAAAGGCTGACTTTCAAAATGTGCCATTTGTACTGGAACTGGCCGGGCACCATTCGTGTGCCAGCGCCATGCAAGTATGCCCACAAGCTGGCTTACCTGTCTGGACAGTACTTGCACTCCGAGCCGGCCATCCAGCTTTCAGACAAGCTATTCTTCCTTTGAGCTGAGCCGAACTACCACAAGTAAACTGCTCAGGTTACAGCAAAACCAGCTGTGATGAACAATTGCGCTGAATAACAAACGACTCATTTGAAATAATGAGAGATtcattattttataatattatgattattactgagtaggaaaagcacatgtGTGTTCAATAACGATAATGATTGCTGTATTACACTTAGCAGATGTCCTGGCTGTGCATGCTGGCTGAATGGAaaagcttactgggacacttgataaATCTGAGccatctttaatgttttaattcaaAGTGAAACTGTTGTGAGTTTGGCAAAGTTACTAATACTGGTTACAAAGTTTcacagtatttttcttttttttttagccactGTTCTTGTGGCAAAAGTATTTGTCAGGGTTTTGTTAATGTTAAGCCCTTCCTGTACTGCCCTTGCTGCGCATTTTGTTGCGCAAAGCTAAACAGCCAGGTAAAAGTCCTCCAATAAACACATGGCTTGTCTTGTACTCTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82166 lncRNA upstream 86399 14060922 ~ 14061171 (+) True G61332
XR_005639583.1 lncRNA upstream 242230 13904693 ~ 13905340 (+) True LOC120561318
XR_005639581.1 lncRNA upstream 242912 13903363 ~ 13904658 (+) True LOC120561317
XR_005639582.1 lncRNA upstream 242912 13903363 ~ 13904658 (+) False LOC120561317
XR_005639584.1 lncRNA upstream 322336 13812459 ~ 13825234 (+) False LOC120561319
TU82211 lncRNA downstream 63339 14252256 ~ 14253343 (+) False LOC120560400
TU82212 lncRNA downstream 73238 14262155 ~ 14262869 (+) True G61376
TU82213 lncRNA downstream 91215 14280132 ~ 14281656 (+) False LOC120560400
TU82225 lncRNA downstream 136473 14325390 ~ 14327533 (+) True G61389
TU82228 lncRNA downstream 139263 14328180 ~ 14329747 (+) True G61391
XM_039804110.1 mRNA upstream 147299 13986231 ~ 14000271 (+) True atad1a
XM_039802081.1 mRNA upstream 186413 13945038 ~ 13961157 (+) True LOC120559997
XM_039802082.1 mRNA upstream 186414 13945038 ~ 13961156 (+) False LOC120559997
XM_039804375.1 mRNA upstream 244921 13869682 ~ 13902649 (+) True LOC120561313
XM_039804373.1 mRNA upstream 501220 13567559 ~ 13646350 (+) True adgrd2
XM_039802181.1 mRNA downstream 9838 14198755 ~ 14211704 (+) False LOC120560074
XM_039802180.1 mRNA downstream 9841 14198758 ~ 14211702 (+) True LOC120560074
XM_039802182.1 mRNA downstream 10490 14199407 ~ 14211702 (+) False LOC120560074
XM_039803371.1 mRNA downstream 23322 14212239 ~ 14232249 (+) False LOC120560659
XM_039803370.1 mRNA downstream 23367 14212284 ~ 14233388 (+) True LOC120560659
TU82172 other upstream 5520 14141442 ~ 14142050 (+) True G61338
TU82171 other upstream 38024 14107483 ~ 14109546 (+) True G61337
TU81938 other upstream 1223734 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 1223734 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 2220969 11926183 ~ 11926601 (+) True G60897
TU82219 other downstream 94500 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 128622 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 128622 14317539 ~ 14319506 (+) False G61390
TU82315 other downstream 200686 14389603 ~ 14392578 (+) True c6h12orf43
TU82322 other downstream 242413 14431330 ~ 14434597 (+) True LOC120560925

Expression Profile